All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 7396 of 118 filtered models

  • TopCUP

    3
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model, an ensemble of 3D U-Nets with EfficientNet encoders that finds protein complexes in tomograms by heatmap segmentation.

    Imaging
    96Openness
  • BPD

    2
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes six protein complexes in tomograms using an ensemble of lightweight 3D U-Nets.

    Imaging
    67Openness
  • MedicoSAM

    319
    Computational Cell AnalyticsJanuary 20, 2025foundation_modelinteractive_annotationmedical_imaging+4

    Segment Anything Model finetuned on diverse medical images, giving a reusable promptable checkpoint for interactive and automatic image segmentation.

    Imaging
    77Openness
  • ppLM-CO

    University of AlbertaDecember 12, 2024codon_optimizationgenerativelanguage_model+4

    Codon optimization framework that adds a generative head to a frozen ProtBert protein language model to design highly expressed coding sequences.

    RNAProtein
    12Openness
  • UltraSam

    13633
    University of StrasbourgNovember 25, 2024foundation_modelimage_classificationsegmentation+3

    Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.

    Imaging
    26Openness
  • University of BirminghamNovember 18, 2024fine_tunedproperty_predictionprotein_function_prediction+3

    LoRA fine-tuning framework for ESM-2 with multi-head attention pooling and contact map enhancement for sequence-only protein property prediction.

    Protein
    13Openness
  • German Cancer Research Center (DKFZ) +5 othersOctober 30, 2024brain_mricnnfoundation_model+7

    Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.

    Imaging
    45Openness
  • scGenePT

    3113
    Chan Zuckerberg InitiativeOctober 28, 2024foundation_modelgene_expressionmultimodal+4

    Single-cell perturbation prediction model that adds gene-level language embeddings from NCBI, UniProt, and Gene Ontology to scGPT representations.

    Single-cell
    90Openness
  • PSALM

    Harvard University +1 otherOctober 17, 2024language_modelproteomicstransfer_learning+1

    Protein domain annotation model pairing an ESM-2 backbone with a probabilistic decoder, bringing language-model sensitivity to Pfam-style assignment.

    Protein
    91Openness
  • ECGFounder

    14234121
    Peking University +2 othersOctober 5, 2024arrhythmia_detectioncardiologycnn+6

    Convolutional ECG foundation model trained on expert annotations spanning 150 diagnostic categories, with 12-lead and single-lead wearable variants.

    Biosignals
    75Openness
  • University of TokyoJuly 25, 2024bertchromatinchromatin_state_modeling+7

    Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.

    DNA & Gene
    86Openness
  • Mahmood LabJune 23, 2024cnnhistologyimage_preprocessing+2

    DeepLabV3 segmentation model that separates tissue from glass background in H&E and IHC whole-slide images, as used by the HEST-Library.

    Pathology
    11Openness
  • Isoformer

    9011722
    InstaDeepJune 20, 2024foundation_modelgene_expressionmultimodal+4

    Multimodal model fusing pre-trained DNA, RNA, and protein encoders through cross-attention to predict tissue-specific transcript isoform expression.

    RNADNA & GeneProtein
    26Openness
  • University of Florida +1 otherJune 14, 2024foundation_modellesion_segmentationmri+7

    3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.

    Imaging
    51Openness
  • M4oE

    5542
    Hong Kong Baptist University +1 otherMay 15, 2024foundation_modelmedical_imagingmixture_of_experts+3

    Mixture-of-Experts foundation model for medical image segmentation that generalizes across imaging modalities and clinical centers.

    Imaging
    28Openness
  • University of OxfordMarch 18, 2024cnnmulti_taskresnet+3

    Self-supervised CNN pretrained on 700,000 person-days of UK Biobank accelerometer data for human activity recognition across devices and cohorts.

    Biosignals
    28Openness
  • Harvard Medical School +6 othersMarch 15, 20243d_cnnbiomarker_discoverycontrastive_learning+9

    Self-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.

    Imaging
    92Openness
  • Stanford UniversityFebruary 26, 2024chemical_mappingcnnfoundation_model+5

    RNA foundation model trained on chemical-mapping data from millions of sequences, predicting reactivity, secondary structure, and degradation.

    RNA
    74Openness
  • MHC-Fine

    9
    Stony Brook UniversityNovember 29, 2023antibodyfine_tunedstructure_prediction+2

    AlphaFold fine-tuned via OpenFold on 944 high-resolution MHC-peptide structures, reaching median peptide RMSD of 0.65 Å on held-out complexes.

    Protein
    35Openness
  • MAIRA-1

    92
    Microsoft ResearchNovember 22, 2023chest_x_raymultimodalmultimodal_transformer+4

    Radiology-specific multimodal LLM that generates the findings section of a chest X-ray report from a frontal image, pairing RAD-DINO with Vicuna-7B.

    ImagingLanguage model
    6Openness
  • Independent ResearcherNovember 14, 2023binding_site_predictionfine_tunedtransfer_learning+2

    LoRA and QLoRA fine-tuning of ESM-2 for token-level prediction of protein binding sites and post-translational modification sites from sequence alone.

    Protein
    93Openness
  • Neuro-GPT

    22899
    University of Southern California +1 otherNovember 7, 2023brain_computer_interfaceeegfoundation_model+5

    EEG foundation model that pairs a convolutional encoder with a GPT backbone, pretrained by masked-segment reconstruction for low-data BCI decoding.

    Biosignals
    46Openness
  • SAM-Med3D

    944182
    Shanghai AI LaboratoryOctober 23, 2023foundation_modelradiologysegmentation+3

    Fully 3D promptable segmentation foundation model for volumetric CT and MR, encoding whole volumes so anatomy can be segmented from one prompt point.

    Imaging
    96Openness
  • City University of Hong Kong +2 othersOctober 1, 2023cnnct_imagingmultimodal+6

    Abdominal CT segmentation model driven by CLIP text embeddings, covering 25 organs and 6 tumor types with zero-shot extension to new categories.

    Imaging
    26Openness