All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 889–912 of 943 models
RoentGen
88——Text-conditioned latent diffusion model that generates synthetic chest X-rays from free-form radiology prompts by adapting Stable Diffusion.
ImagingLanguage model20OpennessChromoformer
3944—Transformer predicting gene expression from histone modifications, using promoter-enhancer Hi-C interactions to capture distal regulatory effects.
DNA & Gene71OpennessBioGPT
4.5K1.5K98.3KGenerative transformer pretrained on PubMed abstracts for biomedical text generation and mining, including relation extraction and question answering.
Language model66OpennessiDNA-ABF
15——DNA language model for interpretable prediction of 4mC, 5hmC, and 6mA methylation sites across species, using multi-scale k-mer BERT encoders.
DNA & Gene53OpennessGenSLM
142142—Genome-scale language model trained on prokaryotic genes and SARS-CoV-2 genomes to model viral evolution and flag emerging variants of concern.
DNA & Gene56OpennessEquiFold
12952—Protein structure prediction model pairing SE(3)-equivariant networks with a coarse-grained representation to fold sequences fast, without MSA inputs.
Protein46OpennessCellpose 2.0
2.3K1.1K—Human-in-the-loop cell segmentation framework enabling custom model training from as few as 100-200 corrected annotations.
Imaging59OpennessMoLFormer-XL
405—143KLarge-scale chemical language model trained on 1.1 billion SMILES strings using linear attention transformers for molecular property prediction.
Small molecule86OpennessMicrobial Gene NLP
2982—Word2vec-based language model trained on 360 million microbial genes that predicts gene function from genomic context without sequence homology.
DNA & Gene87Openness- Shenzhen Research Institute of Big Data +2 othersSeptember 15, 2022chest_x_rayfoundation_modelimage_text_retrieval+7
Medical vision-language pretraining framework that injects structured medical knowledge into radiology image-text learning for VQA and retrieval.
ImagingLanguage model29Openness CheXzero
234524—Self-supervised vision-language model for zero-shot detection of chest X-ray pathologies, trained on image-report pairs without explicit labels.
ImagingPathology70OpennessProteinMPNN
1.8K1.9K—Message passing neural network for fixed-backbone protein sequence design. Achieves 52.4% native sequence recovery, far surpassing Rosetta's 32.9%.
Protein85OpennessM3AE
134171—Shenzhen Research Institute of Big Data +2 othersSeptember 15, 2022autoencoderimage_text_retrievalmultimodal+5Self-supervised medical vision-and-language pretraining via multi-modal masked autoencoders that reconstruct masked image patches and text tokens.
PathologyLanguage model29OpennessscBERT
3594—Pretrained transformer for cell type annotation of scRNA-seq data. Trained on 1.1M cells; outperforms supervised methods on cross-dataset transfer.
Single-cell46OpennessINTERACT
1125—Lieber Institute for Brain DevelopmentAugust 16, 2022deep_learningdna_methylationepigenomic_prediction+4Deep learning model predicting DNA methylation regulatory variants at CpG sites in the human brain, fine-mapping psychiatric disorder risk loci.
DNA & Gene9OpennessMoDNA
—27—Motif-oriented DNA pre-training framework that adds motif prediction to an ELECTRA generator-discriminator setup for motif-aware genomic embeddings.
DNA & Gene11OpennessProtGPT2
—86615.6KAutoregressive protein language model based on GPT-2 that generates de novo protein sequences sampling unexplored regions of protein space.
Protein54OpennessESM-2 & ESMFold
4.2K5.1K1.4MMeta AI's family of protein language models scaled to 15B parameters, paired with ESMFold for fast, alignment-free atomic-level structure prediction.
Protein83OpennessEMDLP
126—RNA methylation site predictor combining multiple sequence encodings with dilated convolution and BiLSTM layers to identify m6A and m1A sites.
RNA34OpennessCARP
259——Protein language model family built on CNNs rather than transformers, matching transformer quality while scaling linearly with sequence length.
Protein81Openness