All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 4972 of 552 filtered models

  • Nanjing University +2 othersMay 30, 2026foundation_modelgene_expression_predictionhistology+5

    Tri-modal foundation model unifying histology images, spatial transcriptomics, and language for zero-shot pathology and spatial biology reasoning.

    PathologySpatial omics
    65Openness
  • PIGMENT

    Tsinghua UniversityMay 29, 2026diffusion_mrifoundation_modelgenerative+6

    Physics-informed generative foundation model for quantitative diffusion MRI that maps brain microstructure and adapts zero-shot to each participant.

    Imaging
    11Openness
  • GlucoFM

    2
    Google Research +1 otherMay 29, 2026continuous_glucose_monitoringfoundation_modelglucose_forecasting+4

    Self-supervised foundation model for continuous glucose monitoring, with dual streams separating slow physiological state from transient events.

    Biosignals
    11Openness
  • DanioDecima

    Biohub +1 otherMay 29, 2026cnnde_novo_designdna+7

    Zebrafish sequence-to-function model predicting cell-type-specific gene expression from DNA sequence across embryonic development.

    DNA & GeneSingle-cell
    22Openness
  • GenBloom

    3
    Helmholtz Munich +1 otherMay 28, 2026cell_type_annotationcontrastive_learningcytology+6

    Genetically aligned foundation model for blood smear cytology that links single-cell morphology to the chromosomal aberrations behind AML and APL.

    Pathology
    65Openness
  • ESMC

    2.9K102.1M
    BiohubMay 27, 2026foundation_modelmasked_language_modelingprotein_design+6

    Protein language model trained on roughly 2.8 billion sequences, forming the representation core of Biohub's world model of protein biology.

    Protein
    63Openness
  • ESMFold2

    2.9K10320.4K
    BiohubMay 27, 2026antibodybinder_designbiomolecular_complex+5

    Structure-prediction and design engine that turns ESMC sequence representations into all-atom 3D structures of proteins and biomolecular complexes.

    Protein
    61Openness
  • Hong Kong University of Science and Technology +9 othersMay 25, 2026foundation_modelself_supervisedtransfer_learning+2

    Lung pathology foundation model adapted from Virchow2 on whole-slide images, validated across 32 tasks spanning the lung diagnostic workflow.

    Pathology
    5Openness
  • Genos-m

    26123
    BGI-HangzhouAIMay 21, 2026foundation_modelgene_fitness_predictionmetagenomics+7

    Mixture-of-Experts genomic foundation model for the human microbiome, with 4.7B parameters pretrained on bacterial, archaeal, and phage genomes.

    DNA & Gene
    73Openness
  • TMEformer

    Sichuan UniversityMay 20, 2026cancerfoundation_modelin_silico_perturbation+6

    Spatial transcriptomics foundation model for the tumor microenvironment, giving TME-aware embeddings and in silico perturbation from one checkpoint.

    Spatial omics
    10Openness
  • MetFoundation

    Hong Kong Baptist UniversityMay 20, 2026aging_clockcontrastive_learningdisease_risk_prediction+6

    Metabolomic foundation model pretrained on UK Biobank NMR metabolite profiles, reused with a frozen backbone for aging, subtyping, and disease risk.

    Metabolomics
    7Openness
  • University of FloridaMay 18, 2026bertbilstmcnn+11

    Multimodal framework that detects and localizes DNA lesions from native nanopore signal, built on the damage-aware LesionBERT foundation model.

    DNA & Gene
    45Openness
  • ETH ZurichMay 18, 2026autoencoderfold_classificationfoundation_model+5

    SE(3)-invariant masked autoencoder that learns protein fold representations from AlphaFold-DB structures, supporting zero-shot fold classification.

    Protein
    78Openness
  • Bio-BLIP

    Stanford UniversityMay 15, 2026foundation_modelgenomicsmendelian_disease+7

    Multimodal Q-former that fuses DNA sequence, gene context, protein function, and text for zero-shot variant interpretation with a frozen LLM.

    DNA & GeneLanguage model
    23Openness
  • University of CopenhagenMay 14, 2026foundation_modelsegmentationtransfer_learning+2

    Domain-specific foundation model for zero-shot plant root image segmentation, built on a MobileSAM backbone and trained across nine root datasets.

    Imaging
    74Openness
  • SpaRank

    Guangxi UniversityMay 13, 2026foundation_modelmultimodalspatial_transcriptomics+2

    Spatial transcriptomics deconvolution foundation model whose rank-based spot encoding transfers across tissues and platforms without retraining.

    Spatial omics
    8Openness
  • OmniGene-4

    1
    Huazhong University of Science and TechnologyMay 12, 2026dnafoundation_modelinstruction_following+7

    Unified bio-language Mixture-of-Experts model spanning DNA, protein sequence and structure, and biological text across eight task families.

    Language modelDNA & GeneProtein
    7Openness
  • FLASH

    Hunter College, CUNYMay 11, 2026drug_discoverydrug_drug_interactiondrug_repurposing+7

    Signed heterogeneous graph foundation model over the SIGMA-KG knowledge graph, predicting drug mode of action and drug-drug interactions zero-shot.

    Small molecule
    10Openness
  • BRIDGE

    The University of Hong KongMay 8, 2026contrastive_learningfoundation_modelgene_expression_prediction+8

    Multi-organ foundation model aligning histology images with spatial-transcriptomics profiles for zero-shot expression and survival prediction.

    PathologySpatial omics
    31Openness
  • ConvergeCELL

    34
    Converge BioMay 7, 2026bulk_rna_seqcontrastive_learningdrug_discovery+5

    Virtual cell foundation model pretrained on over 23 million cells from 5,000 patient samples for drug target and biomarker discovery.

    Single-cell
    67Openness
  • Wisteria

    Inner Mongolia UniversityMay 7, 2026cnndnafoundation_model+6

    DNA language model combining Mamba state-space layers, gated dilated convolutions, and Fourier attention to capture multi-scale regulatory patterns.

    DNA & Gene
    10Openness
  • Waypoint

    Outpost BioMay 6, 2026foundation_modelgptmetagenomics+5

    Microbiome foundation models that treat microbial community composition as a language, enabling zero- and few-shot transfer across prediction tasks.

    DNA & Gene
    23Openness
  • A-CODE

    University of Illinois Urbana-Champaign +1 otherMay 5, 2026binder_designde_novo_designdiffusion+4

    All-atom protein co-design model that generates sequence and structure together in one unified diffusion process, aimed at hard binder design.

    Protein
    8Openness
  • DoFormer

    Columbia University +2 othersMay 4, 2026causal_inferencefoundation_modelgene_expression+3

    Causal multimodal transformer that embeds the do-operator in attention to predict single-cell gene expression under unseen genetic perturbations.

    Single-cell
    8Openness