All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 2538 of 38 filtered models

  • SubCell

    612
    Chan Zuckerberg Initiative +2 othersDecember 8, 2024cell_biologyfluorescence_microscopyfoundation_model+3

    Vision transformers trained on Human Protein Atlas fluorescence microscopy for subcellular protein localization and cell morphology representation.

    Imaging
    84Openness
  • AIDO.Cell

    16817108
    genbio.aiNovember 28, 2024bertcell_biologycell_type_annotation+7

    Single-cell RNA-seq foundation model pretrained on 50 million human cells, encoding the full transcriptome for annotation and perturbation modeling.

    Single-cell
    29Openness
  • CELL-Diff

    7
    Chan Zuckerberg InitiativeOctober 18, 2024cell_biologyde_novo_designdiffusion+7

    Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.

    Imaging
    87Openness
  • DynaCLR

    1023
    Chan Zuckerberg InitiativeOctober 15, 2024cell_biologycell_state_classificationcnn+5

    Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.

    Imaging
    71Openness
  • CellFM

    11078
    Sun Yat-sen UniversityJune 6, 2024cell_biologyfoundation_modeltranscriptomics+1

    Single-cell foundation model with 800M parameters trained on ~100 million human cells, for annotation, perturbation prediction, and gene analysis.

    Single-cell
    26Openness
  • Cytoland

    1029
    Chan Zuckerberg Biohub +1 otherJune 3, 2024cell_biologyimage_translationmicroscopy+3

    Virtual staining models that translate label-free light microscopy into fluorescent-equivalent predictions of nuclei and plasma membranes.

    Imaging
    99Openness
  • CellPLM

    10497
    OmicsMLMay 1, 2024cell_biologyfoundation_modellanguage_model+1

    Single-cell foundation model that treats cells as tokens and tissues as sentences, encoding cell-cell relationships across 85M parameters.

    Single-cell
    50Openness
  • IMPA

    2657
    Theis LabJanuary 8, 2024autoencodercell_biologydrug_discovery+5

    Generative image perturbation autoencoder predicting cellular morphological responses to chemical and genetic perturbations from control images.

    Single-cell
    53Openness
  • CellSAM

    20843
    Van Valen LabNovember 20, 2023cell_biologyfoundation_modelsegmentation+2

    Universal cell segmentation model adapting Meta's SAM to segment mammalian cells, yeast, and bacteria across imaging modalities without retraining.

    Imaging
    32Openness
  • MoTT

    137
    Carnegie Mellon UniversityJuly 22, 2023cell_biologyimage_analysisrepresentation_learning+2

    Transformer-based single particle tracker for fluorescence microscopy, using multi-hypothesis attention to link particles at low SNR and high density.

    Imaging
    20Openness
  • National University of SingaporeJuly 3, 2023cell_biologygraph_neural_networkimage_analysis+2

    Tokenized graph transformer that embeds longitudinal brain functional connectomes from fMRI for interpretable neurodegenerative disease diagnosis.

    Imaging
    26Openness
  • Cellpose 2.0

    2.3K1.1K
    HHMI Janelia Research CampusOctober 3, 2022active_learningcell_biologyfluorescence_microscopy+3

    Human-in-the-loop cell segmentation framework enabling custom model training from as few as 100-200 corrected annotations.

    Imaging
    59Openness
  • Cellpose

    2.3K3.6K
    HHMI Janelia Research CampusDecember 7, 2020brightfieldcell_biologyfluorescence_microscopy+2

    Generalist deep learning algorithm for cell and nucleus instance segmentation using simulated diffusion flows, without per-dataset retraining.

    Imaging
    92Openness
  • pytorch_fnet

    162493
    Allen Institute for Cell ScienceSeptember 17, 2018cell_biologycnnimage_restoration+3

    3D convolutional network that predicts subcellular fluorescence labels from transmitted-light microscopy, enabling label-free imaging of living cells.

    Imaging
    26Openness