All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 2548 of 78 filtered models

  • FOCUS

    University of CambridgeDecember 23, 2025diffusionfoundation_modelgene_expression_imputation+8

    Generative foundation model that imputes genes and denoises spatial transcriptomics, conditioned on H&E histology, scRNA-seq, and spatial priors.

    Spatial omicsPathologySingle-cell
    4Openness
  • M-Optimus

    BioptimusDecember 17, 2025clinical_outcome_predictiondrug_target_identificationfoundation_model+8

    Multimodal foundation model that embeds histology, transcriptomics, and clinical records in one space for patient stratification and target discovery.

    PathologySpatial omicsSingle-cell
    3Openness
  • LG AI ResearchDecember 16, 2025biomarker_predictioncancer_subtypingcontrastive_learning+8

    Pathology foundation model that aligns whole-slide images with genomic, epigenetic, and transcriptomic data for patient-level tumor representations.

    PathologySpatial omics
    14Openness
  • Eva

    4
    Enable Medicine +4 othersDecember 12, 2025cell_type_annotationcross_modal_inferencefoundation_model+8

    Tissue imaging foundation model pretrained on matched H&E histology and spatial proteomics for cross-modal inference and zero-shot retrieval.

    PathologySpatial omics
    4Openness
  • SIGMMA

    1
    Helmholtz Munich +1 otherNovember 19, 2025contrastive_learningcross_modal_retrievalgene_expression_prediction+7

    Multi-modal contrastive model that aligns H&E histopathology with spatial transcriptomics across tissue scales to predict gene expression from images.

    PathologySpatial omics
    20Openness
  • SHEST

    1
    Samsung Advanced Institute for Health Sciences and Technology +2 othersNovember 19, 2025cell_type_annotationgene_expressionhistology+5

    Histopathology model that predicts single-cell type composition and reconstructs spatial gene expression from H&E slides, with no molecular assay.

    PathologySpatial omics
    16Openness
  • Uni-Hema

    1
    Information Technology University of the Punjab +1 otherNovember 18, 2025classificationcnnfoundation_model+8

    Digital hematopathology foundation model unifying blood-cell detection, classification, segmentation, and visual question answering.

    Pathology
    8Openness
  • JWTH

    1
    Technical University of MunichNovember 7, 2025biomarker_detectioncancerfoundation_model+4

    Pathology foundation model that fuses global patch and cell-level tokens via joint-weighted attention pooling for H&E-based biomarker detection.

    Pathology
    5Openness
  • PLUTO-4

    2
    PathAINovember 4, 2025digital_pathologyfoundation_modelhistology+6

    Digital pathology foundation models from PathAI, spanning a 22M-parameter variant and a 1.1B-parameter flagship trained on 551K whole-slide images.

    Pathology
    19Openness
  • GPFM

    12954
    Hong Kong University of Science and Technology +3 othersNovember 1, 2025cancer_diagnosisfeature_extractionfoundation_model+8

    Histopathology foundation model extracting general-purpose features from H&E patches by distilling the UNI, Phikon, and CONCH pathology encoders.

    Pathology
    84Openness
  • PathQC

    1
    Sanford Burnham PrebysOctober 1, 2025biobankinghistologyquality_control+4

    Pan-tissue quality-control model that predicts RNA integrity and autolysis from H&E whole-slide images using frozen UNI foundation model embeddings.

    Pathology
    25Openness
  • ETH ZurichSeptember 23, 2025cancerdeep_setsgene_expression_prediction+4

    Predicts virtual single-cell spatial transcriptomics from H&E histology using frozen pathology foundation models and spot-level supervision.

    PathologySpatial omics
    58Openness
  • Central South UniversityAugust 11, 2025foundation_modelgene_expression_predictionhistology+6

    Histology vision transformer with 80M parameters that predicts spatial gene expression from H&E tissue images and transfers to tumor detection.

    PathologySpatial omics
    59Openness
  • ABMIL

    1522.7K42
    Mahmood Lab +1 otherJuly 15, 2025attentionhistologyslide_level_classification+1

    Attention-based multiple instance learning heads for whole-slide pathology, pretrained on a 108-way pan-cancer slide classification task.

    Pathology
    26Openness
  • MedSigLIP

    29837421K
    Google Research +1 otherJuly 9, 2025contrastive_learningembeddingsfoundation_model+7

    Medically tuned SigLIP encoder from Google that maps medical images and text into one embedding space for zero-shot classification and retrieval.

    ImagingPathology
    30Openness
  • Chiron-o1

    601421
    Shanghai AI Laboratory +2 othersJune 20, 2025chain_of_thoughtclinical_reasoninghistology+6

    Medical multimodal LLM (2B and 8B) trained for generalizable, step-by-step clinical reasoning via Mentor-Intern Collaborative Search.

    PathologyImaging
    67Openness
  • KRONOS

    20432582
    Mahmood Lab +8 othersJune 3, 2025cell_phenotypingfoundation_modelimage_retrieval+4

    Spatial proteomics foundation model, marker-aware and panel-agnostic, pretrained on 47 million multiplexed tissue-imaging patches from 175 markers.

    Spatial omicsPathology
    12Openness
  • BEPH

    7797
    Shanghai Jiao Tong UniversityMarch 10, 2025cancer_diagnosiscancer_subtypingfoundation_model+7

    Histopathology foundation model pretrained with BEiT masked image modeling on 11M+ tissue image tiles for cancer diagnosis and survival prediction.

    Pathology
    73Openness
  • SpatialEx

    38
    Jilin University +1 otherFebruary 23, 2025contrastive_learningfoundation_modelgene_expression_prediction+6

    Histology-anchored framework pairing an H&E foundation model with a cellular hypergraph to predict single-cell multi-omics from tissue images.

    Spatial omicsPathology
    57Openness
  • HealthGPT

    1.6K11538
    Zhejiang University +4 othersFebruary 14, 2025histologyimage_reconstructionmedical_image_generation+7

    Medical vision-language model that unifies image comprehension and generation in one autoregressive transformer via heterogeneous LoRA adapters.

    PathologyImaging
    68Openness
  • MUSK

    240283
    Stanford University +1 otherJanuary 8, 2025cross_modal_retrievalfoundation_modelhistology+9

    Vision-language foundation model for precision oncology, pretrained on 50M pathology images and 1B text tokens via unified masked modeling.

    PathologyLanguage model
    12Openness
  • BiMediX2

    742120
    Mohamed bin Zayed University of Artificial IntelligenceDecember 10, 2024histologyinstruction_tuninglanguage_model+7

    Bilingual Arabic-English medical multimodal model built on Llama 3.1 for radiology, CT, and histology image understanding and question answering.

    Language modelImagingPathology
    11Openness
  • TITAN

    357218118.2K
    Mahmood Lab +3 othersNovember 29, 2024cross_modal_retrievalfoundation_modelhistology+4

    Slide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.

    Pathology
    21Openness
  • MedRegA

    462913
    Hong Kong University of Science and Technology +1 otherOctober 24, 2024histologyimage_classificationinstruction_tuning+8

    Region-aware bilingual medical multimodal LLM that handles image- and region-level vision-language tasks across eight imaging modalities.

    PathologyLanguage model
    65Openness