All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 120 of 20 filtered models

  • LDARNet

    1
    Independent ResearcherJune 3, 2026dnafoundation_modelgene_expression+6

    A 120M-parameter genomic foundation model that learns adaptive DNA token boundaries via H-Net-style dynamic chunking instead of fixed k-mer or byte-pair tokenization.

    DNA & Gene
    26Openness
  • Wisteria

    Inner Mongolia UniversityMay 7, 2026cnndnafoundation_model+6

    A pretrained DNA language model combining Mamba state-space layers, gated dilated convolutions, and Fourier-based attention to capture multi-scale genomic regulatory patterns.

    DNA & Gene
    10Openness
  • Mach-1

    4
    Broad InstituteApril 21, 2026foundation_modelisoform_abundance_predictionpre_mrna+8

    Long-context (64 kb) RNA foundation model using the Striped-Hyena architecture for zero-shot prediction of transcriptome architecture from unspliced pre-mRNA sequence.

    RNA
    39Openness
  • Carnegie Mellon UniversityApril 3, 2026mambamrnamrna_design+6

    A hybrid simulation and machine-learning framework that predicts ribosome location profiles from mRNA sequence alone, combining a structure-aware TASEP with a Mamba polisher.

    RNA
    18Openness
  • PlantCAD2

    894
    Cornell UniversityApril 3, 2026foundation_modelfunctional_annotationgene_expression+7

    A long-context plant DNA language model (676M params, Mamba2) pretrained on 65 angiosperm genomes for cross-species functional annotation.

    DNA & Gene
    69Openness
  • RegFormer

    8
    Chinese Academy of SciencesApril 1, 2026batch_integrationcell_clusteringdrug_response_prediction+7

    GRN-informed single-cell foundation model combining gene regulatory hierarchy priors with long-sequence Mamba modeling for clustering, batch integration, perturbation modeling, and drug response prediction.

    Single-cell
    10Openness
  • ATMOS

    1
    MilaMarch 18, 2026conformation_generationdiffusionfoundation_model+5

    A generative foundation model for biomolecular dynamics that produces atom-level MD-style trajectories for protein monomers and protein-ligand complexes.

    Protein
    11Openness
  • PI-Mamba

    University of Illinois Urbana-ChampaignMarch 17, 2026de_novo_designflow_matchinggenerative+4

    Physics-informed generative model that pairs flow matching with a Mamba state-space backbone for linear-time protein backbone design, scaling to 2,000+ residues.

    Protein
    23Openness
  • Institute of Hydrobiology, Chinese Academy of SciencesMarch 9, 2026dnafoundation_modelgenome_annotation+4

    Genomic foundation model for Cypriniformes fish, built on a Mamba-2 state space model with a 32 kb context window for long-range genome modeling.

    DNA & Gene
    50Openness
  • NeuroNarrator

    Stevens Institute of TechnologyMarch 7, 2026clinical_narrative_generationcontrastive_learningeeg+6

    Generalist EEG-to-text foundation model that translates EEG segments into clinically grounded natural-language descriptions via spectro-spatial grounding and state-space reasoning.

    Biosignals
    18Openness
  • Liquid AI +1 otherMarch 3, 2026admet_predictiondrug_discoverydrug_target_activity_prediction+6

    A 2.6B-parameter Liquid Foundation Model fine-tuned via Insilico's MMAI Gym to handle ADMET, retrosynthesis, drug-target activity, and molecular optimization in one checkpoint.

    Small moleculeLanguage model
    7Openness
  • dnaHNet

    1
    Arc Institute +2 othersFebruary 11, 2026dnafoundation_modelgene_essentiality_prediction+7

    A tokenizer-free, hierarchical autoregressive genomic foundation model that adaptively chunks raw nucleotides, enabling efficient long-context learning and zero-shot variant and gene predictions.

    DNA & Gene
    12Openness
  • PlantBiMoE

    Huazhong University of Science and TechnologyDecember 8, 2025dnafoundation_modelgene_expression+6

    A lightweight plant genome foundation model pairing a bidirectional Mamba backbone with a sparse Mixture-of-Experts, pretrained on 25.4B nucleotides from 42 plant species.

    DNA & Gene
    53Openness
  • PanFoMa

    Shanghai Jiao Tong University +4 othersDecember 2, 2025batch_correctioncancercell_type_annotation+7

    A lightweight pan-cancer single-cell foundation model with a hybrid Transformer-Mamba architecture, released alongside the PanFoMaBench benchmark.

    Single-cell
    13Openness
  • Brown UniversityNovember 25, 2025dnafoundation_modelgenomics+5

    Bidirectional state-space (Mamba-2) genomic model for ultra-long extrachromosomal circular DNA, scaling linearly with sequence length.

    DNA & Gene
    54Openness
  • EMReady2

    12
    Huazhong University of Science and TechnologySeptember 3, 2025cryo_emcryo_etimage_restoration+4

    A Mamba-based dual-branch UNet that enhances cryo-EM and cryo-ET density maps using local resolution-guided learning to improve interpretability.

    Imaging
    54Openness
  • AppleJune 30, 2025foundation_modelmambarepresentation_learning+3

    Apple's foundation model trained on behavioral signals from wearables, modeling 27 HealthKit metrics to improve predictions across 57 health tasks.

    Biosignals
    7Openness
  • NeuroSTORM

    1133
    Chinese University of Hong Kong +7 othersJune 11, 2025disease_diagnosisfmrifoundation_model+6

    A spatiotemporal foundation model that learns generalizable representations directly from 4D functional MRI volumes for diverse brain-imaging tasks.

    ImagingBiosignals
    78Openness
  • KAIST +1 otherFebruary 7, 2025disease_diagnosisfmrifoundation_model+6

    A foundational fMRI model that learns brain dynamics via stochastic optimal control, pretrained self-supervised on resting-state scans from 41,072 UK Biobank subjects.

    Biosignals
    8Openness
  • Caduceus

    24021019.7K
    Kuleshov LabMarch 5, 2024foundation_modelgenomicslanguage_model+2

    Bidirectional, reverse-complement equivariant DNA language models built on Mamba SSMs. Outperforms models 10x larger on long-range variant effect prediction.

    DNA & Gene
    86Openness