Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–22 of 22 filtered models
Enzyme-substrate specificity model that scores catalytic pairs from sequence with a physics-derived dual-encoder and a contrastive objective.
Specificity foundation model predicting small-molecule drug-target binding from sequence, scored as cross-modal retrieval without docking or assays.
CRISPR off-target prediction model that scores gRNA-DNA specificity from sequence, framing guide-target recognition as cross-modal retrieval.
Peptide-MHC binding specificity model that frames presentation as cross-modal retrieval, aligning peptide and MHC encoders by contrastive learning.
Foundation model that predicts microRNA-mRNA target specificity from sequence, using a dual-encoder trained with a symmetric contrastive objective.
Transcription factor-DNA binding specificity prediction from sequence, with a physics-derived dual-encoder trained by symmetric contrastive learning.
Cross-modal protein encoder that aligns ESM-2 sequence embeddings with ProteinMPNN structure embeddings in a shared space for cross-modal retrieval.
Vision-language foundation model linking human brain activation maps and neuroscience text for text-to-brain and brain-to-text generation.
Multi-modal contrastive model that aligns H&E histopathology with spatial transcriptomics across tissue scales to predict gene expression from images.
Tri-modal contrastive model aligning protein structure, sequence, and text in a shared space for zero-shot cross-modal retrieval and classification.
Plasmid characterization and retrieval model aligning DNA sequences with property text across ten facets, from antimicrobial resistance to host range.
CLIP-based vision-language foundation model for eye imaging, enabling zero-shot disease detection and cross-modal retrieval across 11 modalities.
Contrastive language-image model for fMRI functional decoding, predicting cognitive tasks, concepts, and domains from brain activation maps.
Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.
Vision-language model that drafts case-level pathology reports for cutaneous melanocytic lesions and retrieves slides and reports across modalities.
Vision-language foundation model for precision oncology, pretrained on 50M pathology images and 1B text tokens via unified masked modeling.
Wearable accelerometry foundation model distilled from a PPG encoder, predicting cardiovascular and health biomarkers from motion signals alone.
Slide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.
Multimodal contrastive model aligning clinical EEG with free-text reports, enabling zero-shot EEG classification from natural-language prompts.
Multi-modal foundation model for sleep analysis, learning joint representations across brain, cardiac, and respiratory polysomnography signals.
Vision-language model for 3D chest CT that aligns whole volumes with radiology reports for zero-shot abnormality detection and case retrieval.
Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.