All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 72 filtered models

  • M6AFormer

    1
    Max Planck Institute for Heart and Lung ResearchJuly 11, 2026cnnepitranscriptomicsm6a_site_prediction+1

    m6A RNA modification site prediction across the transcriptome, using a CNN-Transformer hybrid to surface unannotated N6-methyladenosine sites.

    RNA
    82Openness
  • TRIOPS

    UC Santa CruzJuly 4, 2026cnncross_attentionimmune_repertoire_analysis+4

    T-cell receptor-MHC restriction prediction from amino acid sequence, mapping TCRs to their restricting HLA allele at 0.97 held-out AUC.

    Protein
    22Openness
  • eRNAformer

    2
    Nanchang UniversityJune 27, 2026cnnenhancer_annotationgenomics+5

    Enhancer RNA mapping model that locates eRNA loci genome-wide from DNA sequence and aggregated RNA-seq signal using a CNN-transformer architecture.

    DNA & GeneRNA
    95Openness
  • DanioDecima

    Biohub +1 otherMay 29, 2026cnnde_novo_designdna+7

    Zebrafish sequence-to-function model predicting cell-type-specific gene expression from DNA sequence across embryonic development.

    DNA & GeneSingle-cell
    22Openness
  • University of FloridaMay 18, 2026bertbilstmcnn+11

    Multimodal framework that detects and localizes DNA lesions from native nanopore signal, built on the damage-aware LesionBERT foundation model.

    DNA & Gene
    45Openness
  • Wisteria

    Inner Mongolia UniversityMay 7, 2026cnndnafoundation_model+6

    DNA language model combining Mamba state-space layers, gated dilated convolutions, and Fourier attention to capture multi-scale regulatory patterns.

    DNA & Gene
    10Openness
  • Deep-Plant

    1
    Colorado State University +1 otherApril 9, 2026chromatincnnenhancer_prediction+6

    Chromatin-informed foundation model predicting regulatory activity and chromatin state directly from plant genomic sequence in Arabidopsis and rice.

    DNA & Gene
    87Openness
  • AdarEdit

    3
    Stanford University +1 otherFebruary 4, 2026a_to_i_editingcnngraph_attention_network+5

    Graph-attention model that predicts A-to-I RNA editing from sequence and secondary structure, treating RNA as a graph with base-pairing edges.

    RNA
    79Openness
  • FoldVision

    Heinrich Heine University DüsseldorfJanuary 23, 2026cnndrug_discoveryenzymes+5

    Structure-based protein encoder that voxelizes every heavy atom into a 3D grid, learning orientation-robust representations for protein function.

    Protein
    20Openness
  • Universidad Carlos III de MadridJanuary 22, 2026cnncryo_emdenoising+5

    Bioimage restoration model pairing a NAFNet backbone with a perceptual GAN loss, best on LPIPS in 7 of 8 AI4Life microscopy benchmarks.

    Imaging
    16Openness
  • Merlin

    4531366.9K
    Stanford UniversityJanuary 1, 2026cnncontrastive_learningct+8

    3D vision-language foundation model for abdominal CT, pretrained on scans, radiology reports, and EHR codes for zero-shot interpretation.

    ImagingLanguage model
    54Openness
  • CLEF

    554
    Nokia Bell LabsDecember 1, 2025cardiovascular_risk_predictioncnncontrastive_learning+5

    Single-lead ECG foundation model pretrained on 12-lead recordings, weighting contrastive pairs by clinical risk for cardiovascular risk prediction.

    Biosignals
    62Openness
  • Melody

    Shandong University +2 othersNovember 23, 2025cnndna_methylationepigenomics+5

    Deep learning framework that predicts DNA methylation from genomic sequence across 39 human tissues, with an scRNA-seq variant for unseen cell types.

    DNA & Gene
    8Openness
  • MethylAI

    7
    Guangzhou National LaboratoryNovember 20, 2025cnndnaepigenetics+6

    Cross-species-pretrained CNN that predicts single-CpG DNA methylation from genomic sequence and interprets the cis-regulatory motifs that govern it.

    DNA & Gene
    64Openness
  • Uni-Hema

    1
    Information Technology University of the Punjab +1 otherNovember 18, 2025classificationcnnfoundation_model+8

    Digital hematopathology foundation model unifying blood-cell detection, classification, segmentation, and visual question answering.

    Pathology
    8Openness
  • New York UniversityNovember 10, 2025cnndrug_discoverygraph_neural_network+8

    Multimodal conversational LLM for metabolite analysis, fusing a molecular-graph GNN and molecular-image CNN with a Vicuna-13B language backbone.

    MetabolomicsSmall molecule
    48Openness
  • NeuroRAD-FM

    Stony Brook University +1 otherSeptember 18, 2025cnnfoundation_modelmolecular_subtyping+6

    Neuro-oncology foundation model for brain tumor MRI, using distributionally robust pretraining for molecular subtyping and survival prediction.

    Imaging
    23Openness
  • McGill University +1 otherSeptember 12, 2025brain_mricnncontrastive_learning+7

    Self-supervised foundation model for 3D brain MRI, learning transferable anatomical representations from unlabeled scans for disease classification.

    Imaging
    74Openness
  • Meta AIJuly 23, 2025cnnconformerelectromyography+7

    Surface-EMG wristband models that decode hand gestures, handwriting, and wrist movement, generalizing across users without per-person calibration.

    Biosignals
    13Openness
  • University of Rijeka +1 otherJuly 1, 2025cnnfoundation_modelimage_classification+4

    Family of CNN foundation models pretrained on multimodal radiology images, a domain-specific alternative to ImageNet transfer learning weights.

    Imaging
    53Openness
  • Hunan Normal University +1 otherFebruary 27, 2025cnnfoundation_modelsegmentation+3

    Universal ultrasound segmentation foundation model adapting the Segment Anything Model to eight anatomical regions in a single promptable network.

    Imaging
    14Openness
  • Brain2Qwerty

    867
    Meta AI +1 otherFebruary 24, 2025brain_to_text_decodingcnneeg+3

    Brain-to-text decoder that reconstructs typed sentences from non-invasive MEG and EEG brain recordings using a CNN, transformer, and language model.

    Biosignals
    11Openness
  • ECG-LM

    42
    Tsinghua University +1 otherFebruary 4, 2025cardiologycardiovascular_disease_detectioncnn+6

    Multimodal ECG language model pairing a specialized signal encoder with a biomedical LLM for cardiovascular disease detection and question answering.

    BiosignalsLanguage model
    24Openness
  • Pulse-PPG

    7345
    University of Memphis +1 otherFebruary 3, 2025cnncontrastive_learningfoundation_model+5

    Photoplethysmography foundation model pretrained on raw wearable signals from a field study, transferring across lab and field health tasks.

    Biosignals
    64Openness