All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 72 filtered models
M6AFormer
1——Max Planck Institute for Heart and Lung ResearchJuly 11, 2026cnnepitranscriptomicsm6a_site_prediction+1m6A RNA modification site prediction across the transcriptome, using a CNN-Transformer hybrid to surface unannotated N6-methyladenosine sites.
RNA82OpennessTRIOPS
———T-cell receptor-MHC restriction prediction from amino acid sequence, mapping TCRs to their restricting HLA allele at 0.97 held-out AUC.
Protein22OpennesseRNAformer
2——Enhancer RNA mapping model that locates eRNA loci genome-wide from DNA sequence and aggregated RNA-seq signal using a CNN-transformer architecture.
DNA & GeneRNA95OpennessDanioDecima
———Zebrafish sequence-to-function model predicting cell-type-specific gene expression from DNA sequence across embryonic development.
DNA & GeneSingle-cell22OpennessDamageFormer
1——Multimodal framework that detects and localizes DNA lesions from native nanopore signal, built on the damage-aware LesionBERT foundation model.
DNA & Gene45OpennessWisteria
———DNA language model combining Mamba state-space layers, gated dilated convolutions, and Fourier attention to capture multi-scale regulatory patterns.
DNA & Gene10OpennessDeep-Plant
1——Chromatin-informed foundation model predicting regulatory activity and chromatin state directly from plant genomic sequence in Arabidopsis and rice.
DNA & Gene87OpennessAdarEdit
3——Graph-attention model that predicts A-to-I RNA editing from sequence and secondary structure, treating RNA as a graph with base-pairing edges.
RNA79OpennessFoldVision
———Structure-based protein encoder that voxelizes every heavy atom into a 3D grid, learning orientation-robust representations for protein function.
Protein20OpennessBioimage restoration model pairing a NAFNet backbone with a perceptual GAN loss, best on LPIPS in 7 of 8 AI4Life microscopy benchmarks.
Imaging16OpennessMerlin
4531366.9K3D vision-language foundation model for abdominal CT, pretrained on scans, radiology reports, and EHR codes for zero-shot interpretation.
ImagingLanguage model54OpennessCLEF
554—Single-lead ECG foundation model pretrained on 12-lead recordings, weighting contrastive pairs by clinical risk for cardiovascular risk prediction.
Biosignals62OpennessMelody
———Deep learning framework that predicts DNA methylation from genomic sequence across 39 human tissues, with an scRNA-seq variant for unseen cell types.
DNA & Gene8OpennessMethylAI
7——Cross-species-pretrained CNN that predicts single-CpG DNA methylation from genomic sequence and interprets the cis-regulatory motifs that govern it.
DNA & Gene64OpennessUni-Hema
—1—Information Technology University of the Punjab +1 otherNovember 18, 2025classificationcnnfoundation_model+8Digital hematopathology foundation model unifying blood-cell detection, classification, segmentation, and visual question answering.
Pathology8OpennessMultimodal conversational LLM for metabolite analysis, fusing a molecular-graph GNN and molecular-image CNN with a Vicuna-13B language backbone.
MetabolomicsSmall molecule48OpennessNeuroRAD-FM
———Neuro-oncology foundation model for brain tumor MRI, using distributionally robust pretraining for molecular subtyping and survival prediction.
Imaging23Openness3D-Neuro-SimCLR
913—Self-supervised foundation model for 3D brain MRI, learning transferable anatomical representations from unlabeled scans for disease classification.
Imaging74OpennessSurface-EMG wristband models that decode hand gestures, handwriting, and wrist movement, generalizing across users without per-person calibration.
Biosignals13OpennessRadiologyNET
58—Family of CNN foundation models pretrained on multimodal radiology images, a domain-specific alternative to ImageNet transfer learning weights.
Imaging53OpennessSAM-MedUS
27—Universal ultrasound segmentation foundation model adapting the Segment Anything Model to eight anatomical regions in a single promptable network.
Imaging14OpennessBrain2Qwerty
867——Brain-to-text decoder that reconstructs typed sentences from non-invasive MEG and EEG brain recordings using a CNN, transformer, and language model.
Biosignals11OpennessECG-LM
—42—Multimodal ECG language model pairing a specialized signal encoder with a biomedical LLM for cardiovascular disease detection and question answering.
BiosignalsLanguage model24OpennessPulse-PPG
7345—Photoplethysmography foundation model pretrained on raw wearable signals from a field study, transferring across lab and field health tasks.
Biosignals64Openness