Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 2113–2136 of 2565 models
Pretrains on EC, GO, InterPro and Gene3D ontology tokens with no amino acids, building a protein feature space from curated function alone.
De novo peptide binder design framework that targets specific motifs, including disordered regions and conserved epitopes, from target sequence alone.
Reshapes a frozen ESM-2 latent space by contrasting it against EC, GO, InterPro and Gene3D ontology tokens for function-aware protein embeddings.
Generates protein sequences from EC, GO, InterPro and Gene3D prompts by cross-attending an ESM-2 decoder onto an annotation transformer encoder.
Extends an ESM-2 token embedding matrix with EC, GO, InterPro and Gene3D tokens so one transformer reads residues and ontology terms together.
Single-cell foundation model pre-trained on 50 million cells for gene network inference, denoising, and cell type prediction.
Genome language model that embeds a genome as a set of contextualized protein embeddings, pretrained on over 100,000 viruses for viromics.
Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.
Multi-omics transformer generating transcriptomic, methylation and proteomic signatures for a given tissue, disease, age group, sex and compound.
Encoder-decoder chemical language model pretrained on 91 million PubChem SMILES, giving embeddings that decode back to valid molecules.
DNA language model of the human genome with a vocabulary learned by byte-pair encoding rather than fixed k-mers, fine-tuned for genome biology tasks.
Framework turning single-cell expression profiles into ranked gene-name sequences, letting off-the-shelf language models generate and annotate cells.
Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.
Protein complex structure assembly guided by predicted inter-chain domain-domain distances, averaging TM-score 0.769 across 46 CASP13-15 targets.
Histopathology image translation with diffusion, moving H&E tiles between stains, tumor types, and organ sites and editing them from omics profiles.
Histopathology vision transformer with 1.1B parameters, pretrained on patches from 500,000 H&E whole-slide images across 4,000 clinical practices.
Multimodal vision-language copilot for pathology that answers open-ended questions about histology images and reasons about differential diagnoses.
Predicts the radius of gyration of intrinsically disordered proteins from 23 physics-derived sequence features, screening missense mutants in bulk.
Structure-based mutational effect prediction from local atomic environments, scoring how substitutions change protein stability and binding affinity.
Lightweight AlphaFlow variant that fine-tunes only AlphaFold's structure module, keeping the Evoformer frozen to cut conformational sampling cost.
Cell-free RNA language model for multi-cancer detection, classifying plasma samples straight from raw sequencing reads without gene annotation.
Chest X-ray conversational assistant that fine-tunes LLaVA-Med on instruction data enriched with predictions from expert radiograph classifiers.
RNA language model that switches between nucleotide and byte-pair tokenization by input length, so one 117M encoder handles sequences of any length.