All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 169192 of 203 filtered models

  • BrainMAE

    10
    Pennsylvania State UniversityJune 24, 2024age_predictionautoencoderbehavior_prediction+7

    Self-supervised masked autoencoder for functional MRI that learns representations from BOLD time-series with per-ROI embeddings and graph attention.

    Biosignals
    17Openness
  • OPERA

    8346
    University of CambridgeJune 23, 2024autoencodercontrastive_learningcough+7

    Respiratory acoustic foundation models pretrained on roughly 136K cough and breathing recordings for disease detection and lung function estimation.

    Biosignals
    59Openness
  • LaBraM

    646398
    Shanghai Jiao Tong UniversityMay 29, 2024abnormal_detectionbrain_computer_interfaceeeg+6

    EEG foundation model that learns transferable brain-signal representations with a vector-quantized tokenizer and masked transformer pretraining.

    Biosignals
    72Openness
  • SleepFM

    17556
    Stanford UniversityMay 28, 2024cnncontrastive_learningcross_modal_retrieval+3

    Multi-modal foundation model for sleep analysis, learning joint representations across brain, cardiac, and respiratory polysomnography signals.

    Biosignals
    76Openness
  • Rice UniversityMay 26, 2024arrhythmia_detectioncontrastive_learningconvnext+6

    ECG foundation model that learns 12-lead waveform representations by contrastively aligning each recording with machine-generated cardiological text.

    Biosignals
    63Openness
  • LaMIM

    1922
    West China Hospital of Sichuan University +1 otherApril 17, 2024autoencoderbrain_mrifoundation_model+6

    Brain MRI foundation model pretrained with masked image modeling on roughly 57,000 multi-contrast head scans for brain tumor diagnosis.

    Imaging
    15Openness
  • SelfPAB

    1821
    NTNUMarch 25, 2024foundation_modelrepresentation_learningself_supervised+1

    Transformer encoder self-supervised on 100,000 hours of dual-accelerometer data, used as a frozen feature extractor for human activity recognition.

    Biosignals
    78Openness
  • Harvard Medical School +6 othersMarch 15, 20243d_cnnbiomarker_discoverycontrastive_learning+9

    Self-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.

    Imaging
    92Openness
  • BrainMass

    2557
    Harbin Institute of Technology (Shenzhen) +1 otherMarch 3, 2024brain_networkdisease_diagnosisfmri+5

    Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.

    Biosignals
    18Openness
  • VoCo

    230113
    Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5

    Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.

    Imaging
    69Openness
  • ProteinINR

    9910
    Kakao BrainJanuary 16, 2024foundation_modelrepresentation_learningstructure_prediction

    Multimodal protein pre-training framework jointly learning sequence, 3D structure, and surface representations via implicit neural representations.

    Protein
    21Openness
  • EEGFormer

    64
    Microsoft +1 otherJanuary 11, 2024anomaly_detectioneegfoundation_model+5

    EEG foundation model pretrained with vector-quantized self-supervision, yielding interpretable discrete codes that transfer to seizure detection.

    Biosignals
    22Openness
  • Google ResearchDecember 19, 2023cnncontrastive_learningdermatology+5

    Google's dermatology image embedding model that produces 6144-dimensional embeddings for data-efficient skin-condition classifiers.

    Imaging
  • xTrimoGene

    42349
    BioMapDecember 10, 2023foundation_modelrepresentation_learning

    Asymmetric encoder-decoder transformer for single-cell RNA-seq that encodes only non-zero genes, cutting FLOPs 10-100x versus standard transformers.

    RNA
    10Openness
  • MMM

    11191
    Microsoft +1 otherDecember 10, 2023brain_computer_interfaceeegemotion_recognition+5

    EEG pretraining framework mapping any electrode montage to a unified topology for topology-agnostic representations that transfer across datasets.

    Biosignals
    60Openness
  • AppleDecember 8, 2023cardiovascularcnncontrastive_learning+6

    Self-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.

    Biosignals
    5Openness
  • Google ResearchDecember 4, 2023acoustic_biomarkersaudio_classificationautoencoder+6

    Health acoustics foundation model that turns short clips of coughs and breaths into embeddings for building acoustic biomarker models with less data.

    Biosignals
  • T3D

    16
    Imperial College London +4 othersDecember 3, 2023cnncontrastive_learningcross_modal_retrieval+8

    Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.

    ImagingLanguage model
    12Openness
  • CXR-CLIP

    123138
    Kakao BrainOctober 20, 2023bertchest_x_raycnn+8

    Large-scale chest X-ray vision-language pretraining model that learns image-report alignment for zero-shot and few-shot radiograph classification.

    Imaging
    18Openness
  • GEARS

    386376
    SNAP (Stanford)August 17, 2023crispr_screen_analysisgenetic_interaction_predictiongenomics+5

    Perturbation prediction model that forecasts transcriptional responses to multi-gene CRISPR perturbations from scRNA-seq and a gene-gene graph.

    Single-cell
    68Openness
  • MoTT

    137
    Carnegie Mellon UniversityJuly 22, 2023cell_biologyimage_analysisrepresentation_learning+2

    Transformer-based single particle tracker for fluorescence microscopy, using multi-hypothesis attention to link particles at low SNR and high density.

    Imaging
    20Openness
  • mEthAE

    34
    Wageningen University & ResearchJuly 18, 2023autoencoderdna_methylationepigenomic_prediction+3

    Chromosome-wise explainable autoencoder that compresses DNA methylation array data up to 400-fold while keeping CpG groupings interpretable.

    DNA & Gene
    47Openness
  • GrayLabJuly 17, 2023antibodyantibody_designgraph_neural_network+5

    Structure-conditioned graph transformer trained with masked language modeling to learn residue encodings for inverse folding and antibody design.

    Protein
    52Openness
  • XA4C

    3
    University of CalgaryJuly 17, 2023autoencodercell_type_annotationgene_expression+3

    Explainable autoencoder for transcriptome analysis that uses SHAP attribution on latent variables to identify critical genes driving gene expression.

    Single-cell
    58Openness