All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 169–192 of 203 filtered models
BrainMAE
—10—Self-supervised masked autoencoder for functional MRI that learns representations from BOLD time-series with per-ROI embeddings and graph attention.
Biosignals17OpennessOPERA
8346—Respiratory acoustic foundation models pretrained on roughly 136K cough and breathing recordings for disease detection and lung function estimation.
Biosignals59OpennessLaBraM
646398—EEG foundation model that learns transferable brain-signal representations with a vector-quantized tokenizer and masked transformer pretraining.
Biosignals72OpennessSleepFM
17556—Multi-modal foundation model for sleep analysis, learning joint representations across brain, cardiac, and respiratory polysomnography signals.
Biosignals76OpennessECG foundation model that learns 12-lead waveform representations by contrastively aligning each recording with machine-generated cardiological text.
Biosignals63OpennessLaMIM
1922—West China Hospital of Sichuan University +1 otherApril 17, 2024autoencoderbrain_mrifoundation_model+6Brain MRI foundation model pretrained with masked image modeling on roughly 57,000 multi-contrast head scans for brain tumor diagnosis.
Imaging15OpennessSelf-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.
Imaging92OpennessBrainMass
2557—Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.
Biosignals18OpennessVoCo
230113—Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.
Imaging69OpennessProteinINR
9910—Multimodal protein pre-training framework jointly learning sequence, 3D structure, and surface representations via implicit neural representations.
Protein21OpennessDerm Foundation
374631Google's dermatology image embedding model that produces 6144-dimensional embeddings for data-efficient skin-condition classifiers.
ImagingxTrimoGene
42349—Asymmetric encoder-decoder transformer for single-cell RNA-seq that encodes only non-zero genes, cutting FLOPs 10-100x versus standard transformers.
RNA10OpennessSelf-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.
Biosignals5OpennessHealth acoustics foundation model that turns short clips of coughs and breaths into embeddings for building acoustic biomarker models with less data.
BiosignalsT3D
—16—Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.
ImagingLanguage model12OpennessCXR-CLIP
123138—Large-scale chest X-ray vision-language pretraining model that learns image-report alignment for zero-shot and few-shot radiograph classification.
Imaging18OpennessGEARS
386376—Perturbation prediction model that forecasts transcriptional responses to multi-gene CRISPR perturbations from scRNA-seq and a gene-gene graph.
Single-cell68OpennessMoTT
137—Transformer-based single particle tracker for fluorescence microscopy, using multi-hypothesis attention to link particles at low SNR and high density.
Imaging20OpennessmEthAE
34—Chromosome-wise explainable autoencoder that compresses DNA methylation array data up to 400-fold while keeping CpG groupings interpretable.
DNA & Gene47OpennessMaskedProteinEnT
123—Structure-conditioned graph transformer trained with masked language modeling to learn residue encodings for inverse folding and antibody design.
Protein52OpennessXA4C
3——Explainable autoencoder for transcriptome analysis that uses SHAP attribution on latent variables to identify critical genes driving gene expression.
Single-cell58Openness