All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 4972 of 72 filtered models

  • Puffin

    10655
    UT Southwestern Medical CenterApril 26, 2024chromatincnngene_expression+3

    Interpretable model of human transcription initiation that decomposes promoter activity into a minimal set of sequence rules at base-pair resolution.

    DNA & Gene
    23Openness
  • University of OxfordMarch 18, 2024cnnmulti_taskresnet+3

    Self-supervised CNN pretrained on 700,000 person-days of UK Biobank accelerometer data for human activity recognition across devices and cohorts.

    Biosignals
    28Openness
  • uniGradICON

    22871
    University of North Carolina at Chapel HillMarch 9, 2024cnnctfoundation_model+3

    Foundation model for medical image registration that aligns CT and MRI across anatomies and modalities without per-pair optimization or retraining.

    Imaging
    65Openness
  • Stanford UniversityFebruary 26, 2024chemical_mappingcnnfoundation_model+5

    RNA foundation model trained on chemical-mapping data from millions of sequences, predicting reactivity, secondary structure, and degradation.

    RNA
    74Openness
  • Google ResearchDecember 19, 2023cnncontrastive_learningdermatology+5

    Google's dermatology image embedding model that produces 6144-dimensional embeddings for data-efficient skin-condition classifiers.

    Imaging
  • AppleDecember 8, 2023cardiovascularcnncontrastive_learning+6

    Self-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.

    Biosignals
    5Openness
  • T3D

    16
    Imperial College London +4 othersDecember 3, 2023cnncontrastive_learningcross_modal_retrieval+8

    Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.

    ImagingLanguage model
    12Openness
  • CXR-CLIP

    123138
    Kakao BrainOctober 20, 2023bertchest_x_raycnn+8

    Large-scale chest X-ray vision-language pretraining model that learns image-report alignment for zero-shot and few-shot radiograph classification.

    Imaging
    18Openness
  • City University of Hong Kong +2 othersOctober 1, 2023cnnct_imagingmultimodal+6

    Abdominal CT segmentation model driven by CLIP text embeddings, covering 25 organs and 6 tumor types with zero-shot extension to new categories.

    Imaging
    26Openness
  • UniBrain

    39183
    Shanghai Jiao Tong University +3 othersSeptember 13, 2023brain_mricnncontrastive_learning+6

    Vision-language pre-training framework for universal brain MRI diagnosis, learning from imaging-report pairs to cover more than ten brain diseases.

    Imaging
    35Openness
  • EvoDiff

    675226
    Microsoft ResearchSeptember 12, 2023cnnde_novo_designdiffusion+8

    Discrete diffusion model for protein sequence and MSA generation, enabling controllable de novo design directly in sequence space without structure.

    Protein
    84Openness
  • MIS-FM

    25050
    University of Electronic Science and Technology of China +3 othersJune 29, 2023cnnctfoundation_model+3

    Self-supervised foundation model for 3D medical image segmentation, pretrained on roughly 110,000 unannotated CT volumes via Volume Fusion.

    Imaging
    73Openness
  • MedLSAM

    52282
    Shanghai AI Laboratory +3 othersJune 26, 2023cnnctfew_shot+6

    3D CT localization foundation model that pairs MedLAM with SAM to segment any anatomical structure at a fixed, dataset-independent annotation cost.

    Imaging
    76Openness
  • STU-Net

    372159
    Shanghai AI LaboratoryApril 13, 2023cnnctfoundation_model+5

    Scalable and transferable U-Net family (14M–1.4B parameters) for 3D medical image segmentation, supervised-pretrained on TotalSegmentator.

    Imaging
    82Openness
  • UniverSeg

    588185
    MIT CSAIL +3 othersApril 12, 2023cnnfew_shot_learningfoundation_model+4

    Medical image segmentation model that solves unseen segmentation tasks in context from a few labeled examples, with no retraining or fine-tuning.

    Imaging
    49Openness
  • PMC-CLIP

    241
    Shanghai Jiao Tong UniversityMarch 13, 2023cnncontrastive_learninghistology+7

    Biomedical vision-language model trained contrastively on 1.6M figure-caption pairs mined from PubMed Central open-access articles.

    PathologyImaging
    63Openness
  • PCRLv2

    10083
    The University of Hong Kong +1 otherJanuary 2, 2023chest_x_rayclassificationcnn+8

    Self-supervised pretraining framework for medical imaging that unifies pixel restoration with contrastive learning across 2D and 3D image backbones.

    Imaging
    71Openness
  • PubMedCLIP

    1833116.7K
    Hasso Plattner InstituteDecember 27, 2021cnncontrastive_learninghistology+8

    Medical-domain CLIP fine-tuned on radiology image-caption pairs from ROCO, serving as a drop-in visual encoder for medical visual question answering.

    PathologyLanguage model
    75Openness
  • Basenji2

    473225
    Calico Life SciencesAugust 6, 2020chromatincnngene_expression+5

    Cross-species convolutional network trained jointly on human and mouse genomes to predict regulatory sequence activity and noncoding variant effects.

    DNA & Gene
    79Openness
  • Arizona State University +1 otherAugust 19, 2019classificationcnnct+7

    Self-supervised 3D pretrained models for CT and MRI that learn anatomical representations from unlabeled volumes and transfer to segmentation tasks.

    Imaging
    20Openness
  • Med3D

    2.2K681
    TencentAILabHealthcareApril 1, 20193d_resnetcnnct+8

    Pretrained 3D-ResNet backbones for volumetric medical image analysis, co-trained across eight CT and MRI segmentation datasets for transfer learning.

    Imaging
    75Openness
  • pytorch_fnet

    162493
    Allen Institute for Cell ScienceSeptember 17, 2018cell_biologycnnimage_restoration+3

    3D convolutional network that predicts subcellular fluorescence labels from transmitted-light microscopy, enabling label-free imaging of living cells.

    Imaging
    26Openness
  • Basenji

    473515
    Calico Life SciencesMay 1, 2018chromatincnngene_expression+4

    Dilated convolutional network that predicts cell-type-specific epigenetic and transcriptional profiles from DNA sequence across mammalian genomes.

    DNA & Gene
    73Openness
  • Basset

    268955
    Harvard UniversityJuly 1, 2016chromatincnngenomics+3

    Convolutional neural network that predicts DNA accessibility from sequence across 164 DNase-seq cell types, enabling variant effect prediction.

    DNA & Gene
    80Openness