All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 241264 of 552 filtered models

  • University of Notre Dame +2 othersOctober 9, 2025diffusiondrug_discoveryfew_shot+5

    Graph diffusion transformer for in-context molecular design, adapting to new tasks from a few molecule-property demonstrations without fine-tuning.

    Small molecule
    74Openness
  • University of TübingenOctober 7, 2025biomarker_discoveryfoundation_modelgenomics+3

    Tabular foundation model adapted for extreme feature counts, enabling in-context prediction on wide omics tables with tens of thousands of features.

    DNA & GeneSingle-cell
    32Openness
  • FLOWR.root

    1383
    Pfizer +3 othersOctober 2, 2025binding_affinity_predictionde_novo_designflow_matching+4

    SE(3)-equivariant flow-matching model for pocket-aware 3D ligand generation, predicting binding affinity and confidence in the same network.

    Small moleculeProtein
    87Openness
  • Central South UniversityOctober 1, 2025cross_modality_translationfoundation_modelself_supervised

    Single-cell foundation model with a Hyena backbone that translates across omics layers, predicting protein abundance from transcriptomes zero-shot.

    Single-cell
    76Openness
  • University of PennsylvaniaOctober 1, 2025batch_integrationcell_type_annotationfoundation_model+5

    Kidney-specialized single-cell foundation model trained across four mammalian species for zero-shot cell-type annotation and batch integration.

    Single-cellSpatial omics
    22Openness
  • Shanghai Jiao Tong UniversityOctober 1, 2025brain_age_predictionbrain_mridensenet+8

    Brain MRI foundation model pairing DenseNet and Vision Transformer backbones with mixture of experts for disease diagnosis and brain age prediction.

    Imaging
    8Openness
  • Scooby

    6912463
    Technical University of Munich +4 othersOctober 1, 2025chromatinchromatin_accessibility_predictionconvolutional_neural_network+5

    Predicts single-cell scRNA-seq coverage and scATAC-seq insertion profiles from DNA sequence, adapting the Borzoi trunk with a cell-specific decoder.

    Single-cell
    70Openness
  • Shanghai AI LaboratorySeptember 25, 2025foundation_modelmultimodalprotein_function_prediction+2

    Multimodal scientific foundation model unifying protein, DNA/RNA, and small-molecule structure in one token vocabulary for cross-domain reasoning.

    ProteinDNA & GeneSmall molecule
    66Openness
  • NeuroRAD-FM

    Stony Brook University +1 otherSeptember 18, 2025cnnfoundation_modelmolecular_subtyping+6

    Neuro-oncology foundation model for brain tumor MRI, using distributionally robust pretraining for molecular subtyping and survival prediction.

    Imaging
    23Openness
  • McGill University +1 otherSeptember 12, 2025brain_mricnncontrastive_learning+7

    Self-supervised foundation model for 3D brain MRI, learning transferable anatomical representations from unlabeled scans for disease classification.

    Imaging
    74Openness
  • BrainFM

    208
    Johns Hopkins University +4 othersAugust 30, 2025foundation_modelimage_synthesismulti_task+4

    Modality-agnostic foundation model for human brain imaging that runs five core neuroimaging tasks across uncalibrated CT and MRI without retraining.

    Imaging
    75Openness
  • OwkinZero

    1
    OwkinAugust 22, 2025drug_discoveryfoundation_modelreinforcement_learning+2

    Biological reasoning language model that post-trains Qwen3 with reinforcement learning from verifiable rewards for drug-discovery tasks.

    Language model
    15Openness
  • scYeast

    51
    Shanghai Jiao Tong UniversityAugust 20, 2025cell_type_annotationfoundation_modeltransformer+1

    Single-cell foundation model for yeast that injects regulatory network priors into transformer attention for zero-shot and fine-tuned analysis.

    Single-cell
    68Openness
  • rBio

    14616
    Chan Zuckerberg InitiativeAugust 18, 2025cell_biologyfoundation_modelreinforcement_learning+2

    Reasoning language model post-trained on virtual cell simulations, answering questions about gene perturbations and their effects in natural language.

    Language model
    60Openness
  • Broad InstituteAugust 17, 2025chromatinfoundation_modelgene_regulation+7

    Multimodal foundation model predicting genome-wide binding of chromatin-associated proteins from protein sequence, DNA sequence, and chromatin state.

    DNA & GeneProtein
    25Openness
  • Earth Species ProjectAugust 15, 2025beatsbioacousticsfoundation_model+4

    Self-supervised bioacoustic audio encoder that turns animal-sound recordings into transferable embeddings for species classification and detection.

    Biosignals
    59Openness
  • Central South UniversityAugust 11, 2025foundation_modelgene_expression_predictionhistology+6

    Histology vision transformer with 80M parameters that predicts spatial gene expression from H&E tissue images and transfers to tumor detection.

    PathologySpatial omics
    59Openness
  • University of Science and Technology of ChinaAugust 7, 2025bertfoundation_modellanguage_model+8

    RNA foundation model pretrained jointly on sequences and secondary structures for structure prediction, homology and splice site classification.

    RNA
    92Openness
  • PoET-2

    2710
    OpenProtein.AIAugust 5, 2025foundation_modellanguage_modelprotein_design+5

    Multimodal, retrieval-augmented protein foundation model that learns family-specific evolutionary constraints with optional structure conditioning.

    Protein
    37Openness
  • EPFLAugust 1, 2025foundation_modelgene_essentiality_predictionprotein_protein_interaction_prediction+4

    Proteome-scale protein language model whose representations enable zero-shot protein-protein interaction and gene essentiality prediction.

    Protein
    64Openness
  • GREmLN

    38
    Chan Zuckerberg Initiative +2 othersJuly 9, 2025cell_type_annotationchromatinfoundation_model+6

    Single-cell transcriptomics foundation model that encodes gene regulatory network structure into self-attention through graph signal processing.

    Single-cell
    80Openness
  • MNCN-CSICJuly 9, 2025bertembeddingsfoundation_model+4

    Zebrafish single-cell foundation model built on the Geneformer framework, producing frozen gene and cell embeddings for developmental analysis.

    Single-cell
    46Openness
  • MedGemma

    1.6K374127.1K
    Google Research +1 otherJuly 9, 2025clinical_reasoningelectronic_health_recordsfine_tuning+8

    Open medical multimodal models from Google, built on Gemma 3 with a medically tuned SigLIP vision encoder for clinical text and image understanding.

    Language modelImaging
    41Openness
  • MedSigLIP

    29837421K
    Google Research +1 otherJuly 9, 2025contrastive_learningembeddingsfoundation_model+7

    Medically tuned SigLIP encoder from Google that maps medical images and text into one embedding space for zero-shot classification and retrieval.

    ImagingPathology
    30Openness