Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 241–262 of 262 models
Single-cell foundation model pre-trained on 22 million transcriptomes, using rank-based gene encoding for clustering and trajectory inference.
Biomedical vision-language model trained contrastively on 15M PubMed Central figure-caption pairs for zero-shot classification, retrieval, and VQA.
Masked DNA language model trained on 800+ species with explicit species conditioning, separating conserved regulatory motifs from background bias.
Masked DNA language model trained on over 800 vertebrate genomes and conditioned on species identity to learn conserved regulatory sequence features.
Parameter-efficient protein language model that matches larger models such as ESM-2 on protein prediction tasks using under 10% of the parameters.
DNA foundation models from 500M to 2.5B parameters, trained on 3,200+ human genomes and 850 species for variant effect prediction.
Multi-modal protein language model trained on sequences paired with biomedical text, enabling zero-shot function prediction and text-based retrieval.
Generative transformer pretrained on PubMed abstracts for biomedical text generation and mining, including relation extraction and question answering.
Large-scale chemical language model trained on 1.1 billion SMILES strings using linear attention transformers for molecular property prediction.
Autoregressive protein language model based on GPT-2 that generates de novo protein sequences sampling unexplored regions of protein space.
RNA language model that learns base-level embeddings capturing sequence context and secondary structure, enabling fast structural alignment.
Protein language model that fuses Gene Ontology knowledge graphs with masked language modeling, improving protein function and interaction prediction.
Protein language model pretrained on UniRef90 with masked language modeling and Gene Ontology annotation prediction, at 16 million parameters.
Medical-domain CLIP fine-tuned on radiology image-caption pairs from ROCO, serving as a drop-in visual encoder for medical visual question answering.
Bidirectional transformer for DNA using k-mer tokenization, fine-tunable for promoter, splice site, and transcription factor binding prediction.
Sparse attention transformer that extends BERT to 8x longer sequences via random, local, and global attention, with genomic sequence applications.