All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 217240 of 316 filtered models

  • German Cancer Research Center (DKFZ) +5 othersOctober 30, 2024brain_mricnnfoundation_model+7

    Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.

    Imaging
    45Openness
  • SleepGPT

    22
    South China University of Technology +1 otherOctober 28, 2024eeglanguage_modelself_supervised+3

    Language model over whole-night sleep stage sequences that corrects automated sleep staging and supplies features for sleep disorder diagnosis.

    Biosignals
    51Openness
  • SS-CXR

    13
    Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3

    Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.

    Imaging
    22Openness
  • PaPaGei

    17481
    Nokia Bell LabsOctober 27, 2024bias_evaluationcardiovascular_healthcnn+5

    Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.

    Biosignals
    67Openness
  • IBM ResearchOctober 25, 2024drug_discoveryfoundation_modelgraph_neural_network+5

    Molecular foundation model that late-fuses graph, image, and SMILES encoders into one embedding for molecular property and drug target prediction.

    Small molecule
    77Openness
  • CELL-Diff

    7
    Chan Zuckerberg InitiativeOctober 18, 2024cell_biologyde_novo_designdiffusion+7

    Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.

    Imaging
    87Openness
  • Google ResearchOctober 17, 2024activity_recognitionfoundation_modelgenerative_modeling+5

    Wearable sensor foundation model pretrained on heart rate, accelerometer, skin temperature and other channels for activity recognition and imputation.

    Biosignals
    7Openness
  • DynaCLR

    1023
    Chan Zuckerberg InitiativeOctober 15, 2024cell_biologycell_state_classificationcnn+5

    Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.

    Imaging
    71Openness
  • Eko HealthOctober 11, 2024disease_detectionecgfoundation_model+5

    Masked-autoencoder foundation model pretrained on digital-stethoscope heart sounds and single-lead ECG for cardiovascular disease detection.

    Biosignals
    22Openness
  • Columbia UniversityOctober 11, 2024language_modelprotein_dynamicsrepresentation_learning+4

    Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.

    Protein
    84Openness
  • D-BETA

    3613120
    Singapore Management University +1 otherOctober 3, 2024autoencodercontrastive_learningecg_classification+6

    ECG foundation model pretrained on 12-lead waveforms paired with clinical reports, enabling label-efficient and zero-shot cardiac diagnosis.

    BiosignalsLanguage model
    27Openness
  • ECG-JEPA

    1617
    Zuse Institute Berlin +1 otherOctober 2, 2024ecg_classificationelectrocardiogramfoundation_model+4

    Joint-embedding predictive foundation model pretrained on over a million unlabeled ECGs, learning transferable 12-lead representations for diagnosis.

    Biosignals
    62Openness
  • Brain-JEPA

    17479
    National University of SingaporeSeptember 28, 2024brain_dynamicsdisease_diagnosisfmri+5

    Brain-dynamics foundation model for resting-state fMRI, adapting the Joint-Embedding Predictive Architecture with brain gradient positioning.

    BiosignalsImaging
    18Openness
  • Charité – Universitätsmedizin BerlinSeptember 11, 2024clinical_phenotypingcontrastive_learningcross_modal_retrieval+5

    Multimodal contrastive model aligning clinical EEG with free-text reports, enabling zero-shot EEG classification from natural-language prompts.

    BiosignalsLanguage model
    26Openness
  • CHIEF

    715545
    Harvard Medical School +2 othersSeptember 4, 2024cancer_detectionfoundation_modelhistology+8

    Weakly supervised histopathology foundation model pretrained on 60,530 whole-slide images for cancer detection, prognosis, and molecular prediction.

    Pathology
    15Openness
  • MaCo

    1276
    Shanghai AI LaboratorySeptember 2, 2024chest_x_raycontrastive_learningfoundation_model+9

    Chest X-ray foundation model that pairs masked image modeling with image-report contrastive alignment for zero-shot diagnosis and phrase grounding.

    Imaging
    74Openness
  • NeuroLM

    163101
    Shanghai Jiao Tong University +1 otherAugust 27, 2024eegeeg_decodingfoundation_model+7

    Multi-task EEG foundation model that treats brain signals as a foreign language, pairing a text-aligned neural tokenizer with a GPT-2 backbone.

    BiosignalsLanguage model
    66Openness
  • Georgia Institute of Technology +1 otherAugust 12, 2024cnncontrastive_learningfoundation_model+3

    Foundation model for photoplethysmography (PPG) that learns quality-robust waveform representations for heart rate, blood pressure, and AF detection.

    Biosignals
    36Openness
  • ECG-FM

    30096
    University of Toronto +1 otherAugust 9, 2024cardiologycontrastive_learningdisease_classification+6

    Open transformer foundation model for 12-lead electrocardiograms, pretrained on 1.5 million unlabeled ECGs with a wav2vec 2.0 self-supervised recipe.

    Biosignals
    67Openness
  • MADELEINE

    6745
    Mahmood Lab +1 otherAugust 5, 2024contrastive_learninghistologymultimodal+1

    Slide-level pathology foundation model that learns whole-slide embeddings by aligning multiple stains of the same tissue during pretraining.

    Pathology
    42Openness
  • USFM

    350112
    Fudan UniversityAugust 1, 2024classificationfoundation_modelimage_restoration+4

    Ultrasound foundation model pretrained on over two million multi-organ images, transferring to segmentation, classification, and image enhancement.

    Imaging
    22Openness
  • University of TokyoJuly 25, 2024bertchromatinchromatin_state_modeling+7

    Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.

    DNA & Gene
    86Openness
  • CREMA

    7
    Medical AI Co., Ltd.June 26, 2024contrastive_learningecg_diagnosticselectrocardiography+5

    Self-supervised foundation model for 12-lead ECG, pairing masked autoencoder pretraining with contrastive regularization for robust diagnostics.

    Biosignals
    10Openness
  • BrainMAE

    10
    Pennsylvania State UniversityJune 24, 2024age_predictionautoencoderbehavior_prediction+7

    Self-supervised masked autoencoder for functional MRI that learns representations from BOLD time-series with per-ROI embeddings and graph attention.

    Biosignals
    17Openness