All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 98 filtered models

  • MolSight

    Renmin University of ChinaJuly 2, 2026graph_neural_networkmultimodaloptical_chemical_structure_recognition+2

    Vision-language model that reads molecular structure images, translating them to SMILES, captions, and properties via chemical-bond topology.

    Small moleculeLanguage model
    21Openness
  • ProLoc

    Nanjing UniversityJune 27, 2026functional_region_localizationlanguage_modelmultimodal+3

    Text-guided localization model that grounds natural-language functional descriptions to specific residue regions of a protein sequence.

    ProteinLanguage model
    10Openness
  • Washington University in St. LouisJune 22, 2026cell_biologycell_type_annotationgene_expression+5

    Single-cell language model that prepends biomedical knowledge-graph tokens to cell sentences, grounding cell type annotation in pathway structure.

    Single-cellLanguage model
    23Openness
  • BioMatrix

    41162
    Shanghai AI Laboratory +1 otherJune 20, 2026foundation_modellanguage_modelmolecule_generation+6

    Decoder-only foundation model that unifies sequences, 3D structures, and natural language for small molecules and proteins in one shared token space.

    ProteinSmall moleculeLanguage model
    67Openness
  • BacteReason

    University of TokyoJune 7, 2026antimicrobial_resistanceantimicrobial_resistance_predictionbacteria+5

    Reasoning LLM that predicts antimicrobial susceptibility of clinical bacterial isolates and supplies mechanistic explanations for each prediction.

    DNA & GeneLanguage model
    20Openness
  • AMix-2

    Shanghai AI Laboratory +4 othersMay 30, 2026diffusionfold_classificationfoundation_model+6

    Protein-text foundation model placing amino acid sequences and natural language in one token space for protein understanding and de novo design.

    ProteinLanguage model
    10Openness
  • Bio-BLIP

    Stanford UniversityMay 15, 2026foundation_modelgenomicsmendelian_disease+7

    Multimodal Q-former that fuses DNA sequence, gene context, protein function, and text for zero-shot variant interpretation with a frozen LLM.

    DNA & GeneLanguage model
    23Openness
  • OmniGene-4

    Huazhong University of Science and TechnologyMay 12, 2026dnafoundation_modelinstruction_following+7

    Unified bio-language Mixture-of-Experts model spanning DNA, protein sequence and structure, and biological text across eight task families.

    Language modelDNA & GeneProtein
    7Openness
  • CellPulse

    Wuhan Institute of VirologyApril 24, 2026drug_discoveryfoundation_modelgene_expression+5

    Direction-aware foundation model trained on bulk RNA-seq differential-expression profiles to simulate coordinated gene dynamics in viral infection.

    Single-cellLanguage model
    4Openness
  • MMPT-FM

    389
    Merck & Co. +1 otherApril 20, 2026analog_designdrug_discoveryfoundation_model+2

    Chemical language model that generates matched molecular pair transformations from SMILES and SMARTS to design medicinal-chemistry analogs.

    Small moleculeLanguage model
    82Openness
  • GPT-Rosalind

    4.6K
    OpenAIApril 16, 2026dnadrug_discoveryfoundation_model+9

    OpenAI's frontier reasoning model for life-sciences research, tuned for multi-step workflows in protein engineering, genomics, and drug discovery.

    Language model
    5Openness
  • Arc Institute +3 othersMarch 20, 2026go_term_annotationlarge_language_modelmultimodal+5

    Multimodal reasoning LLM for protein function prediction, fusing protein language model embeddings to emit interpretable GO-term reasoning traces.

    ProteinLanguage model
    58Openness
  • Pengcheng Laboratory +2 othersMarch 13, 2026chain_of_thoughtcheminformaticsdrug_discovery+6

    Molecular reasoning model built on DeepSeek-7B, using chain-of-thought and reinforcement learning for property prediction, generation, and reactions.

    Small moleculeLanguage model
    21Openness
  • Liquid AI +1 otherMarch 3, 2026admet_predictiondrug_discoverydrug_target_activity_prediction+6

    Small-molecule drug discovery foundation model covering ADMET, retrosynthesis, drug-target activity, and molecular optimization in a 2.6B checkpoint.

    Small moleculeLanguage model
    7Openness
  • VirtualCRISPR

    Chan Zuckerberg Biohub Chicago +2 othersFebruary 28, 2026crisprdrug_discoveryfoundation_model+2

    Large language model trained on functional genomics data to prioritize novel therapeutic targets from genome-wide CRISPR knockout screens.

    DNA & GeneLanguage model
    12Openness
  • NeuroVLM

    8
    University of California, San DiegoFebruary 9, 2026autoencoderbrain_decodingcontrastive_learning+2

    Vision-language foundation model linking human brain activation maps and neuroscience text for text-to-brain and brain-to-text generation.

    ImagingLanguage model
    74Openness
  • BioBridge

    2
    Tongji University +1 otherFebruary 4, 2026continual_learninglanguage_modelmultimodal+5

    Connects a frozen protein language model to a general LLM via a cross-modal projector, adding protein reasoning without catastrophic forgetting.

    Language modelProtein
    13Openness
  • OKR-CELL

    BGI ResearchJanuary 9, 2026batch_effect_correctioncell_biologycell_clustering+7

    Cross-modal single-cell foundation model that aligns gene-expression profiles with LLM-enriched cell descriptions in a shared embedding space.

    Single-cellLanguage model
    23Openness
  • CMAP

    Amazon Web ServicesJanuary 7, 2026antibodyantibody_developabilityin_context_learning+4

    Antibody developability predictor pairing text and protein language models, using in-context learning to fit new assays without retraining.

    ProteinLanguage model
    4Openness
  • BiomeGPT

    1
    Massachusetts General HospitalJanuary 5, 2026biomarker_discoverydisease_classificationfoundation_model+6

    Gut microbiome foundation model pretrained on human shotgun metagenomes, learning species-level taxonomic representations for disease prediction.

    DNA & GeneLanguage model
    8Openness
  • NetMedGPT

    2
    University of Hamburg +1 otherJanuary 4, 2026drug_discoverydrug_repurposingfoundation_model+6

    Transformer foundation model pretrained on a biomedical knowledge graph for zero-shot drug repurposing, target, and adverse-effect prediction.

    Language modelSmall molecule
    24Openness
  • Merlin

    452517.2K
    Stanford UniversityJanuary 1, 2026cnncontrastive_learningct+8

    3D vision-language foundation model for abdominal CT, pretrained on scans, radiology reports, and EHR codes for zero-shot interpretation.

    ImagingLanguage model
    54Openness
  • scMOBA

    11
    Chinese Academy of Sciences +1 otherDecember 2, 2025cell_biologycell_type_annotationdata_integration+5

    Conversational single-cell and spatial multi-omics brain foundation model, with zero-shot cell annotation and disease prediction across species.

    Single-cellLanguage model
    5Openness
  • H3BERTa

    13978
    University of BernNovember 3, 2025antibodyantibody_repertoire_analysisbert+8

    Antibody language model pretrained only on CDR-H3 loops, giving embeddings for immune repertoire analysis and antibody sequence classification.

    ProteinLanguage model
    83Openness