Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 169–192 of 341 filtered models
Cryo-ET particle picking model, an ensemble of 3D U-Nets with EfficientNet encoders that finds protein complexes in tomograms by heatmap segmentation.
Cryo-ET particle picking model that localizes six protein complexes in tomograms using an ensemble of lightweight 3D U-Nets.
Prostate cancer detection model for MRI and transrectal ultrasound, trained with patch-level contrastive learning across 4,401 patients.
Generalist cell segmentation pairing the cyto3 super-generalist model with one-click networks that denoise, deblur, and upsample microscopy images.
Cryo-ET particle picking model that averages tiny, medium, and large 3D U-Nets pretrained on simulated tomograms and fine-tuned on experimental data.
Segment Anything fine-tuned for nucleus segmentation in histopathology, supporting automatic and interactive annotation on unseen tissue images.
Cryo-ET particle picking ensemble of three 3D segmentation models predicting particle-center heatmaps with ResNet50d and EfficientNetV2-M backbones.
Translates whole-brain imaging phenotypes between humans and mice through a shared latent space built from transcriptomics and connectivity.
Histopathology image translation model that standardizes H&E staining style, then generates virtual collagen, reticulin, and trichrome fiber images.
Biomedical vision-language model aligning image regions to UMLS clinical concepts, for zero-shot diagnosis across 10 imaging modalities.
3D medical imaging foundation model self-supervised on roughly 100,000 MRI, CT, and PET volumes spanning more than ten organs and three modalities.
Grounded multimodal language model for endoscopic surgery, supporting visual dialogue, region-based question answering, and bounding-box grounding.
Segment Anything Model finetuned on diverse medical images, giving a reusable promptable checkpoint for interactive and automatic image segmentation.
3D vision foundation model for computed tomography, contrastively pretrained on 148,000 scans for segmentation, triage, retrieval, and concept search.
Cryo-EM reconstruction with neural radiance fields in Euclidean 3D space, separating conformational motion from compositional assembly states.
Breast ultrasound generative foundation model that synthesizes conditioned images to train screening, diagnosis, and prognosis models.
Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.
Conditional diffusion model with cross-attention that synthesizes subject-specific 3D intrinsic connectivity networks from resting-state fMRI.
Tumor microenvironment segmentation on H&E slides, labeling 13 tissue and cell components from a single model in semantic or panoptic form.
Spike inference from calcium imaging traces, driven by a multistate GCaMP kinetic model that generates the synthetic data its decoders are trained on.
Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.
Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.
Cryo-ET segmentation framework adapting SAM2 to vesicles and membrane-bound compartments in tomograms and 2D micrographs, zero-shot or fine-tuned.