All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 19 of 9 filtered models

  • GPFlow

    University of Illinois Urbana-ChampaignJuly 10, 2026flow_matchinggenerativemotif_scaffolding+4

    Variable-length generative protein design across structure, sequence, motif scaffolding, and peptide co-design via a generalized Poisson flow.

    Protein
    18Openness
  • RigidSSL

    201
    Chinese University of Hong KongMarch 2, 2026conformational_ensemble_generationflow_matchinggenerative+5

    Self-supervised SE(3) geometric pretraining for protein backbone generators, improving designability, motif scaffolding, and conformational ensembles.

    Protein
    73Openness
  • HD-Prot

    74
    The Hong Kong Polytechnic University +2 othersDecember 17, 2025diffusiongenerativeinverse_folding+6

    Multimodal protein language model that adds a continuous-token diffusion head to a discrete pLM, modeling structure without vector quantization.

    Protein
    14Openness
  • RFdiffusion2

    439114
    Institute for Protein DesignDecember 3, 2025de_novo_designdiffusionenzyme_design+3

    Atom-level diffusion model for de novo enzyme design that scaffolds arbitrary active-site geometries without specifying catalytic residue positions.

    Protein
    69Openness
  • Northwestern Polytechnical University +3 othersOctober 29, 2025diffusionenzyme_designenzymes+5

    Enzyme backbone design model that adds substrate and catalytic-site control to a pretrained SE(3) flow-matching generator via a lightweight adapter.

    Protein
    86Openness
  • UCSFOctober 18, 2025de_novo_designflow_matchinggenerative+2

    All-atom generative model for de novo protein design using SE(3) flow matching over oriented residue rigid bodies.

    Protein
    67Openness
  • RAG-ESM

    2716
    EPFLApril 2, 2025de_novo_designgenerativemotif_scaffolding+5

    Retrieval-augmented protein language model that conditions ESM-2 on homologous sequences via cross-attention for conditional sequence generation.

    Protein
    90Openness
  • EvoDiff

    675226
    Microsoft ResearchSeptember 12, 2023cnnde_novo_designdiffusion+8

    Discrete diffusion model for protein sequence and MSA generation, enabling controllable de novo design directly in sequence space without structure.

    Protein
    84Openness
  • RFdiffusion

    3K1.3K
    Institute for Protein DesignJuly 11, 2023de_novo_designdiffusionmotif_scaffolding+2

    De novo protein design diffusion model that generates backbone structures conditioned on binding targets, symmetry constraints, and functional motifs.

    Protein
    60Openness