All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 121144 of 158 filtered models

  • M3FM

    1938
    University of Oxford +6 othersFebruary 6, 2025chest_x_rayclipcontrastive_learning+9

    Multimodal medical imaging foundation model for zero-shot clinical diagnosis and report generation from chest X-ray and CT in English and Chinese.

    ImagingLanguage model
    60Openness
  • ECG-LM

    42
    Tsinghua University +1 otherFebruary 4, 2025cardiologycardiovascular_disease_detectioncnn+6

    Multimodal ECG language model pairing a specialized signal encoder with a biomedical LLM for cardiovascular disease detection and question answering.

    BiosignalsLanguage model
    24Openness
  • TrASPr

    13
    University of PennsylvaniaJanuary 20, 2025splicingsplicing_predictiontransformer+1

    Multi-transformer model that predicts tissue-specific alternative splicing outcomes and generalizes zero-shot to unseen cellular conditions.

    RNA
    33Openness
  • Brainfound

    4
    Tsinghua University +2 othersJanuary 10, 2025contrastive_learningcross_modality_translationdiffusion+9

    Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.

    ImagingLanguage model
    7Openness
  • MUSK

    240283
    Stanford University +1 otherJanuary 8, 2025cross_modal_retrievalfoundation_modelhistology+9

    Vision-language foundation model for precision oncology, pretrained on 50M pathology images and 1B text tokens via unified masked modeling.

    PathologyLanguage model
    12Openness
  • SABER

    18
    Chan Zuckerberg InitiativeJanuary 1, 2025cryo_etfoundation_modelsegmentation+3

    Cryo-ET segmentation framework adapting SAM2 to vesicles and membrane-bound compartments in tomograms and 2D micrographs, zero-shot or fine-tuned.

    Imaging
    78Openness
  • MedPLIB

    1343910
    Baidu +3 othersDecember 12, 2024histologymedical_image_groundingmixture_of_experts+8

    Biomedical multimodal LLM that answers questions about medical images and returns pixel-level segmentation masks, using a mixture-of-experts design.

    ImagingLanguage model
    80Openness
  • ProCyon

    6013
    Harvard Medical School +1 otherDecember 11, 2024drug_discoveryfoundation_modelmultimodal+6

    Multimodal foundation model integrating protein sequence, structure, and natural language to model and generate protein phenotypes across scales.

    ProteinLanguage modelSmall molecule
    83Openness
  • Evo

    1.5K2501.8K
    Arc InstituteNovember 15, 2024dnafoundation_modelgenomics+2

    Genomic foundation model with 7B parameters that models prokaryotic DNA, RNA, and protein at single-nucleotide resolution over a 131k-token context.

    DNA & Gene
    70Openness
  • Harvard Medical School +1 otherNovember 12, 2024chromatingene_expressiongenomics+4

    Conditional autoregressive genomic language model trained on 13.6M mammalian promoters, scoring promoter variants, including indels, zero-shot.

    DNA & Gene
    89Openness
  • Earth Species ProjectNovember 11, 2024audio_captioningbioacousticsfoundation_model+5

    Audio-language foundation model for bioacoustics that answers natural-language questions about animal sounds, with zero-shot species classification.

    BiosignalsLanguage model
    61Openness
  • Van Valen LabNovember 3, 2024cell_phenotypingfoundation_modelspatial_proteomics+2

    Cell phenotyping model for spatial proteomics using a language-informed vision transformer to classify cell types zero-shot across marker panels.

    ImagingSpatial omics
    33Openness
  • Columbia UniversityOctober 11, 2024language_modelprotein_dynamicsrepresentation_learning+4

    Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.

    Protein
    84Openness
  • TUMSyn

    4526
    ShanghaiTech University +2 othersSeptember 25, 2024cnncontrastive_learningfoundation_model+6

    Text-guided MRI synthesis model that generates brain MR sequences and resolutions on demand from routine scans using imaging-metadata prompts.

    Imaging
    28Openness
  • Medical SAM 2

    933257
    University of Oxford +1 otherAugust 1, 2024foundation_modelhistologyinteractive_segmentation+5

    SAM2-based foundation model that segments 2D and 3D medical images by treating volumes and image sets as video object tracking.

    Imaging
    74Openness
  • MIT CSAIL +1 otherJuly 16, 2024cnnfoundation_modelinteractive_segmentation+5

    Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.

    Imaging
    63Openness
  • VISTA3D

    292776.6K
    NVIDIAJune 7, 2024cnnctfoundation_model+5

    Medical image segmentation foundation model for 3D CT and MRI, covering 127 anatomical classes automatically plus interactive point-prompt refinement.

    Imaging
    73Openness
  • CONCH

    5181K67.1K
    Mahmood Lab +1 otherMarch 19, 2024contrastive_learningfoundation_modelhistology+3

    Histopathology vision-language foundation model pretrained on 1.17 million image-caption pairs with contrastive and captioning objectives.

    Imaging
    44Openness
  • uniGradICON

    22871
    University of North Carolina at Chapel HillMarch 9, 2024cnnctfoundation_model+3

    Foundation model for medical image registration that aligns CT and MRI across anatomies and modalities without per-pair optimization or retraining.

    Imaging
    65Openness
  • BrainMass

    2557
    Harbin Institute of Technology (Shenzhen) +1 otherMarch 3, 2024brain_networkdisease_diagnosisfmri+5

    Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.

    Biosignals
    18Openness
  • MedSAM

    4.4K1.5K1.8K
    Bowang Lab +6 othersJanuary 22, 2024foundation_modelhistologymedical_image_segmentation+4

    Promptable foundation model for universal medical image segmentation, fine-tuned from SAM on 1.57M image-mask pairs across 10 imaging modalities.

    Imaging
    82Openness
  • AppleDecember 8, 2023cardiovascularcnncontrastive_learning+6

    Self-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.

    Biosignals
    5Openness
  • T3D

    16
    Imperial College London +4 othersDecember 3, 2023cnncontrastive_learningcross_modal_retrieval+8

    Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.

    ImagingLanguage model
    12Openness
  • BioCLIP

    27024124.8K
    Imageomics InstituteNovember 30, 2023biodiversitycontrastive_learningfoundation_model+5

    Vision foundation model for the tree of life, trained on TreeOfLife-10M for zero-shot species classification of plants, animals, and fungi.

    Imaging
    93Openness