All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 7396 of 141 filtered models

  • BiMediX2

    742120
    Mohamed bin Zayed University of Artificial IntelligenceDecember 10, 2024histologyinstruction_tuninglanguage_model+7

    Bilingual Arabic-English medical multimodal model built on Llama 3.1 for radiology, CT, and histology image understanding and question answering.

    Language modelImagingPathology
    11Openness
  • SubCell

    612
    Chan Zuckerberg Initiative +2 othersDecember 8, 2024cell_biologyfluorescence_microscopyfoundation_model+3

    Vision transformers trained on Human Protein Atlas fluorescence microscopy for subcellular protein localization and cell morphology representation.

    Imaging
    84Openness
  • BrainIAC

    13924
    Mass General Brigham +4 othersDecember 2, 2024brain_age_predictionbrain_mricontrastive_learning+7

    Self-supervised vision foundation model for structural brain MRI, providing a reusable encoder for brain age, survival, and image classification.

    Imaging
    24Openness
  • TITAN

    357218118.2K
    Mahmood Lab +3 othersNovember 29, 2024cross_modal_retrievalfoundation_modelhistology+4

    Slide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.

    Pathology
    21Openness
  • UltraSam

    13633
    University of StrasbourgNovember 25, 2024foundation_modelimage_classificationsegmentation+3

    Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.

    Imaging
    26Openness
  • Recursion PharmaceuticalsNovember 12, 2024cell_paintingdrug_discoveryfoundation_model+4

    Cell Painting microscopy foundation model, a channel-agnostic masked autoencoder producing morphological embeddings for zero-shot phenotypic analysis.

    Imaging
    26Openness
  • Cryo-IEF

    73
    Westlake UniversityNovember 6, 2024contrastive_learningcryo_emfoundation_model+3

    Cryo-EM foundation model pre-trained on 65 million particle images, enabling zero-shot classification, pose clustering, and quality assessment.

    Imaging
    42Openness
  • Van Valen LabNovember 3, 2024cell_phenotypingfoundation_modelspatial_proteomics+2

    Cell phenotyping model for spatial proteomics using a language-informed vision transformer to classify cell types zero-shot across marker panels.

    ImagingSpatial omics
    33Openness
  • SS-CXR

    13
    Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3

    Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.

    Imaging
    22Openness
  • MedRegA

    462913
    Hong Kong University of Science and Technology +1 otherOctober 24, 2024histologyimage_classificationinstruction_tuning+8

    Region-aware bilingual medical multimodal LLM that handles image- and region-level vision-language tasks across eight imaging modalities.

    PathologyLanguage model
    65Openness
  • PULSE

    67301.9K
    The Ohio State University +1 otherOctober 21, 2024cardiologyecgecg_interpretation+6

    Multimodal large language model that interprets 12-lead electrocardiogram images, answering open-ended clinical questions and generating ECG reports.

    BiosignalsImaging
    84Openness
  • gCIS

    109
    United Imaging Intelligence +1 otherOctober 14, 2024ct_imagingfoundation_modellesion_detection+4

    CT segmentation foundation model that uses task prompts to segment 83 anatomical structures and lesions across whole-body scans in a single network.

    Imaging
    14Openness
  • ECG-JEPA

    1617
    Zuse Institute Berlin +1 otherOctober 2, 2024ecg_classificationelectrocardiogramfoundation_model+4

    Joint-embedding predictive foundation model pretrained on over a million unlabeled ECGs, learning transferable 12-lead representations for diagnosis.

    Biosignals
    62Openness
  • Brain-JEPA

    17479
    National University of SingaporeSeptember 28, 2024brain_dynamicsdisease_diagnosisfmri+5

    Brain-dynamics foundation model for resting-state fMRI, adapting the Joint-Embedding Predictive Architecture with brain gradient positioning.

    BiosignalsImaging
    18Openness
  • TUMSyn

    4526
    ShanghaiTech University +2 othersSeptember 25, 2024cnncontrastive_learningfoundation_model+6

    Text-guided MRI synthesis model that generates brain MR sequences and resolutions on demand from routine scans using imaging-metadata prompts.

    Imaging
    28Openness
  • CHIEF

    715545
    Harvard Medical School +2 othersSeptember 4, 2024cancer_detectionfoundation_modelhistology+8

    Weakly supervised histopathology foundation model pretrained on 60,530 whole-slide images for cancer detection, prognosis, and molecular prediction.

    Pathology
    15Openness
  • MaCo

    1276
    Shanghai AI LaboratorySeptember 2, 2024chest_x_raycontrastive_learningfoundation_model+9

    Chest X-ray foundation model that pairs masked image modeling with image-report contrastive alignment for zero-shot diagnosis and phrase grounding.

    Imaging
    74Openness
  • LLaVA-Tri

    412944
    UC Santa Cruz +3 othersAugust 6, 2024foundation_modelhistologymultimodal+5

    Medical vision-language model trained on the MedTrinity-25M dataset, answering questions and generating text about radiology and histology images.

    Language modelPathology
    30Openness
  • Medical SAM 2

    933257
    University of Oxford +1 otherAugust 1, 2024foundation_modelhistologyinteractive_segmentation+5

    SAM2-based foundation model that segments 2D and 3D medical images by treating volumes and image sets as video object tracking.

    Imaging
    74Openness
  • USFM

    350112
    Fudan UniversityAugust 1, 2024classificationfoundation_modelimage_restoration+4

    Ultrasound foundation model pretrained on over two million multi-organ images, transferring to segmentation, classification, and image enhancement.

    Imaging
    22Openness
  • MIT CSAIL +1 otherJuly 16, 2024cnnfoundation_modelinteractive_segmentation+5

    Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.

    Imaging
    63Openness
  • PathChat

    478
    Mahmood Lab +4 othersJuly 10, 2024cancerdiagnosisfoundation_model+7

    Multimodal vision-language copilot for pathology that answers open-ended questions about histology images and reasons about differential diagnoses.

    PathologyLanguage model
    35Openness
  • CryoViT

    125
    Stanford UniversityJune 30, 2024cryo_etelectron_tomographyfoundation_model+3

    Semi-supervised cryo-ET segmentation framework that adapts DINOv2 vision transformers for 3D organelle annotation using sparse 2D slice labels.

    Imaging
    45Openness
  • Shenzhen Research Institute of Big Data +1 otherJune 27, 2024histologyinstruction_tuningmedical_image_understanding+5

    Open medical multimodal LLMs (7B and 34B) for visual question answering over radiology, pathology, and endoscopy images, trained on PubMedVision.

    PathologyLanguage model
    52Openness