All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 141 filtered models

  • HASSL

    2
    TUM.ai +3 othersJuly 5, 2026cell_biologycontrastive_learningfoundation_model+4

    Hierarchy-aware self-supervised model for single-cell microscopy that preserves morphological structure suppressed by imaging-modality confounders.

    ImagingSingle-cell
    37Openness
  • University of California, San DiegoJuly 1, 2026brain_mridisease_classificationfoundation_model+1

    Brain MRI morphometry model that estimates cortical thickness, surface area, and volume in milliseconds instead of hours.

    Imaging
    47Openness
  • V3Cell

    Xinjiang Technical Institute of Physics and Chemistry +2 othersJune 24, 2026cell_biologydrug_discoverygenerative+4

    Vision-guided model that builds virtual 3D organoid surrogates from brightfield microscopy to predict chemical perturbation responses without omics.

    ImagingPathology
    4Openness
  • Helmholtz MunichJune 22, 2026cell_biologycontrastive_learningfluorescence_microscopy+6

    Self-supervised 3D masked autoencoder for volumetric fluorescence microscopy, aligned to ESM2 embeddings to predict protein localization.

    ImagingSingle-cell
    71Openness
  • SpineAgent

    6
    University of WashingtonJune 7, 2026contrastive_learningfoundation_modelimage_classification+8

    Multi-sequence spine MRI foundation model with DINOv3 encoders, supporting condition classification, pathology localization, and report generation.

    Imaging
    55Openness
  • DaX

    2
    DAMO AcademyJune 5, 2026biomarker_predictioncancer_subtypingdino+5

    Pathology vision foundation model adapting DINOv3 self-supervised learning to whole-slide histopathology across many magnifications and scales.

    Pathology
    11Openness
  • Nanjing University +2 othersMay 30, 2026foundation_modelgene_expression_predictionhistology+5

    Tri-modal foundation model unifying histology images, spatial transcriptomics, and language for zero-shot pathology and spatial biology reasoning.

    PathologySpatial omics
    65Openness
  • GenBloom

    3
    Helmholtz Munich +1 otherMay 28, 2026cell_type_annotationcontrastive_learningcytology+6

    Genetically aligned foundation model for blood smear cytology that links single-cell morphology to the chromosomal aberrations behind AML and APL.

    Pathology
    65Openness
  • Hong Kong University of Science and Technology +9 othersMay 25, 2026foundation_modelself_supervisedtransfer_learning+2

    Lung pathology foundation model adapted from Virchow2 on whole-slide images, validated across 32 tasks spanning the lung diagnostic workflow.

    Pathology
    5Openness
  • University of CopenhagenMay 14, 2026foundation_modelsegmentationtransfer_learning+2

    Domain-specific foundation model for zero-shot plant root image segmentation, built on a MobileSAM backbone and trained across nine root datasets.

    Imaging
    74Openness
  • BRIDGE

    The University of Hong KongMay 8, 2026contrastive_learningfoundation_modelgene_expression_prediction+8

    Multi-organ foundation model aligning histology images with spatial-transcriptomics profiles for zero-shot expression and survival prediction.

    PathologySpatial omics
    31Openness
  • Emory University +2 othersApril 30, 2026brain_age_estimationdisease_classificationfoundation_model+6

    Self-supervised brain MRI foundation model built on DINOv3, pretrained on roughly 6.6 million unlabeled axial slices for neuroimaging tasks.

    Imaging
    49Openness
  • H2O

    Tencent AI for Life Science Lab +2 othersApril 24, 2026contrastive_learningfoundation_modelgene_expression+6

    Pathology foundation model that infers spatial transcriptomics and proteomics directly from routine H&E whole-slide images, with no spatial assay.

    PathologySpatial omics
    7Openness
  • GenoJEPA

    Beijing University of Posts and TelecommunicationsApril 6, 2026foundation_modelgenomicsrepresentation_learning+4

    Genomic foundation model that learns DNA representations by predicting masked regions in latent space rather than reconstructing raw nucleotides.

    DNA & Gene
    22Openness
  • Halo

    Duke University School of MedicineApril 6, 2026cell_segmentationcellpose_sammultimodal+5

    Whole-cell segmentation model for spatial transcriptomics that fuses DAPI nuclear images with RNA transcript density to recover true cell boundaries.

    Spatial omics
    63Openness
  • Digepath

    Chinese Academy of SciencesApril 1, 2026cancer_diagnosisfoundation_modelgastrointestinal_cancer+7

    Gastrointestinal histopathology foundation model pretrained on 353 million multi-scale patches from 210,000 H&E whole-slide images of GI tissue.

    Pathology
    15Openness
  • genbio.aiMarch 20, 2026foundation_modelhistologyrepresentation_learning+3

    Histopathology foundation model with 1.1B parameters, trained entirely on public data using JEDI, a dual-stage strategy combining JEPA and DINO.

    Pathology
    21Openness
  • University of Texas at Arlington +1 otherMarch 13, 2026gangenerativehistology+4

    Virtual staining model that generates four IHC markers, HER2, Ki67, ER, and PR, from H&E using a generator conditioned on a frozen UNI encoder.

    Pathology
    17Openness
  • mnDINO

    Morgridge Institute for ResearchMarch 12, 2026cell_biologyfluorescence_microscopyfoundation_model+4

    Vision transformer trained with DINO self-supervision to segment micronuclei in DNA-stained fluorescence images across cell lines and microscopes.

    Imaging
    32Openness
  • MIT +1 otherMarch 11, 2026cell_type_annotationfoundation_modelgene_expression_prediction+7

    Cell-centric microscopy foundation model that distills morphology and microenvironment views into a unified embedding for virtual spatial omics.

    Spatial omicsImagingPathology
    15Openness
  • SEAL

    484
    Mahmood Lab +2 othersFebruary 15, 2026cancer_subtypingfoundation_modelgene_expression_prediction+5

    Vision-omics finetuning that aligns pathology foundation models with spatial transcriptomics so morphology features predict local gene expression.

    PathologySpatial omics
    32Openness
  • Imageomics InstituteFebruary 10, 2026biodiversitycontrastive_learningfoundation_model+6

    Vision foundation model for the tree of life, scaling BioCLIP 2 to a ViT-H/14 backbone and more organism images for zero-shot species classification.

    Imaging
    93Openness
  • EchoJEPA

    3294
    Bowang LabFebruary 2, 2026cardiac_ultrasoundechocardiographyejection_fraction_estimation+6

    Joint-embedding predictive foundation model for echocardiography, pretrained on 18M cardiac ultrasound videos for artifact-robust representations.

    Imaging
    62Openness
  • OpticalDNA

    Hunan UniversityFebruary 2, 2026dnafoundation_modelgenomics+5

    Vision-language DNA model that renders genomic sequence as visual layouts, reading regions up to 450,000 bases with about 20x better token efficiency.

    DNA & Gene
    16Openness