All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 4972 of 76 filtered models

  • CellSeg3D

    1221
    Mathis LabMay 17, 20243d_imagingmicroscopysegmentation+2

    Self-supervised 3D cell segmentation for fluorescence microscopy, pairing WNet3D with Swin-UNetR to segment volumes without annotated training data.

    Imaging
    89Openness
  • MoME

    3125
    Beijing Institute of Technology +3 othersMay 16, 2024brain_mricnncurriculum_learning+7

    Universal brain lesion segmentation for multi-modal brain MRI, using a Mixture of Modality Experts to span diverse modalities and lesion types.

    Imaging
    79Openness
  • M4oE

    5542
    Hong Kong Baptist University +1 otherMay 15, 2024foundation_modelmedical_imagingmixture_of_experts+3

    Mixture-of-Experts foundation model for medical image segmentation that generalizes across imaging modalities and clinical centers.

    Imaging
    28Openness
  • M3D

    454172924
    Beijing Academy of Artificial IntelligenceMarch 31, 2024ctimage_text_retrievalinstruction_tuning+9

    Multimodal large language model for 3D medical imaging that handles report generation, visual question answering, and segmentation on CT volumes.

    ImagingLanguage model
    77Openness
  • VoCo

    230113
    Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5

    Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.

    Imaging
    69Openness
  • MedSAM

    4.4K1.5K1.8K
    Bowang Lab +6 othersJanuary 22, 2024foundation_modelhistologymedical_image_segmentation+4

    Promptable foundation model for universal medical image segmentation, fine-tuned from SAM on 1.57M image-mask pairs across 10 imaging modalities.

    Imaging
    82Openness
  • T3D

    16
    Imperial College London +4 othersDecember 3, 2023cnncontrastive_learningcross_modal_retrieval+8

    Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.

    ImagingLanguage model
    12Openness
  • SegVol

    386122747
    Beijing Academy of Artificial IntelligenceNovember 22, 2023ctfoundation_modelmultimodal+4

    Promptable 3D foundation model for volumetric CT segmentation, covering over 200 anatomical categories through point, box, and free-text prompts.

    Imaging
    100Openness
  • CellSAM

    20843
    Van Valen LabNovember 20, 2023cell_biologyfoundation_modelsegmentation+2

    Universal cell segmentation model adapting Meta's SAM to segment mammalian cells, yeast, and bacteria across imaging modalities without retraining.

    Imaging
    32Openness
  • SAM-Med3D

    944182
    Shanghai AI LaboratoryOctober 23, 2023foundation_modelradiologysegmentation+3

    Fully 3D promptable segmentation foundation model for volumetric CT and MR, encoding whole volumes so anatomy can be segmented from one prompt point.

    Imaging
    96Openness
  • VisionFM

    12958
    Chinese University of Hong KongOctober 8, 2023biomarker_predictionfoundation_modeloct+3

    Multi-modal ophthalmic foundation model for generalist eye AI, spanning fundus imaging and OCT for disease screening, segmentation, and biomarkers.

    ImagingPathology
    14Openness
  • City University of Hong Kong +2 othersOctober 1, 2023cnnct_imagingmultimodal+6

    Abdominal CT segmentation model driven by CLIP text embeddings, covering 25 organs and 6 tumor types with zero-shot extension to new categories.

    Imaging
    26Openness
  • SAM-Med2D

    1.1K258
    Shanghai AI LaboratoryAugust 30, 2023foundation_modelhistologyradiology+4

    Medical imaging adaptation of the Segment Anything Model, fine-tuned on 4.6M images and 19.7M masks for promptable segmentation across 10 modalities.

    Imaging
    82Openness
  • MoTT

    137
    Carnegie Mellon UniversityJuly 22, 2023cell_biologyimage_analysisrepresentation_learning+2

    Transformer-based single particle tracker for fluorescence microscopy, using multi-hypothesis attention to link particles at low SNR and high density.

    Imaging
    20Openness
  • Endo-FM

    230135
    Chinese University of Hong Kong +1 otherJune 29, 2023detectionendoscopyfoundation_model+5

    Endoscopy video foundation model that learns spatial-temporal representations from unlabeled clips for classification, segmentation, and detection.

    Imaging
    77Openness
  • MIS-FM

    25050
    University of Electronic Science and Technology of China +3 othersJune 29, 2023cnnctfoundation_model+3

    Self-supervised foundation model for 3D medical image segmentation, pretrained on roughly 110,000 unannotated CT volumes via Volume Fusion.

    Imaging
    73Openness
  • MedLSAM

    52282
    Shanghai AI Laboratory +3 othersJune 26, 2023cnnctfew_shot+6

    3D CT localization foundation model that pairs MedLAM with SAM to segment any anatomical structure at a fixed, dataset-independent annotation cost.

    Imaging
    76Openness
  • LVM-Med

    217100
    University of Stuttgart +6 othersJune 20, 2023classificationcontrastive_learningct+11

    Self-supervised vision foundation model pretrained on 1.3M medical images via second-order graph matching, for segmentation and classification.

    Imaging
    28Openness
  • CellViT

    39131
    Institute for AI in MedicineJune 14, 2023foundation_modelhistologysegmentation+2

    Vision Transformer for cell instance segmentation and classification in H&E whole-slide images, extended by CellViT++ with foundation backbones.

    Imaging
    21Openness
  • STU-Net

    372159
    Shanghai AI LaboratoryApril 13, 2023cnnctfoundation_model+5

    Scalable and transferable U-Net family (14M–1.4B parameters) for 3D medical image segmentation, supervised-pretrained on TotalSegmentator.

    Imaging
    82Openness
  • UniverSeg

    588185
    MIT CSAIL +3 othersApril 12, 2023cnnfew_shot_learningfoundation_model+4

    Medical image segmentation model that solves unseen segmentation tasks in context from a few labeled examples, with no retraining or fine-tuning.

    Imaging
    49Openness
  • Southeast University +2 othersMarch 1, 2023convolutional_neural_networkctimage_registration+7

    Self-supervised pretraining for 3D medical images that learns anatomical correspondences between scans, giving encoders transferable to segmentation.

    Imaging
    17Openness
  • PCRLv2

    10083
    The University of Hong Kong +1 otherJanuary 2, 2023chest_x_rayclassificationcnn+8

    Self-supervised pretraining framework for medical imaging that unifies pixel restoration with contrastive learning across 2D and 3D image backbones.

    Imaging
    71Openness
  • Cellpose 2.0

    2.3K1.1K
    HHMI Janelia Research CampusOctober 3, 2022active_learningcell_biologyfluorescence_microscopy+3

    Human-in-the-loop cell segmentation framework enabling custom model training from as few as 100-200 corrected annotations.

    Imaging
    59Openness