All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 49–72 of 105 filtered models
3D-Neuro-SimCLR
913—Self-supervised foundation model for 3D brain MRI, learning transferable anatomical representations from unlabeled scans for disease classification.
Imaging74OpennessCLASP
44—Tri-modal contrastive model aligning protein structure, sequence, and text in a shared space for zero-shot cross-modal retrieval and classification.
Protein42OpennessMedSigLIP
29837421KMedically tuned SigLIP encoder from Google that maps medical images and text into one embedding space for zero-shot classification and retrieval.
ImagingPathology30OpennessMELP
311818Multi-scale ECG-language model that aligns 12-lead ECG signals with clinical text at token, beat, and rhythm levels for zero-shot cardiac diagnosis.
BiosignalsLanguage model68OpennessEyeCLIP
8765—The Hong Kong Polytechnic University +5 othersJune 21, 2025clipcontrastive_learningcross_modal_retrieval+11CLIP-based vision-language foundation model for eye imaging, enabling zero-shot disease detection and cross-modal retrieval across 11 modalities.
ImagingLanguage model15OpennessSensorLM
—58—Google Research +2 othersJune 10, 2025activity_recognitioncontrastive_learningcross_modal_retrieval+6Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.
BiosignalsLanguage model41OpennessBioCLIP 2
774348.7KVision foundation model for the tree of life, trained on 214 million organism images across 952,000 taxa for zero-shot species classification.
Imaging93OpennessSpatialEx
38——Jilin University +1 otherFebruary 23, 2025contrastive_learningfoundation_modelgene_expression_prediction+6Histology-anchored framework pairing an H&E foundation model with a cellular hypergraph to predict single-cell multi-omics from tissue images.
Spatial omicsPathology57OpennessFetalCLIP
7022—Mohamed bin Zayed University of Artificial Intelligence +1 otherFebruary 20, 2025classificationcontrastive_learningfoundation_model+7Vision-language foundation model for fetal ultrasound, pretrained on 210,035 image-text pairs for plane classification, biometry, and segmentation.
Imaging13OpennessM3FM
1938—Multimodal medical imaging foundation model for zero-shot clinical diagnosis and report generation from chest X-ray and CT in English and Chinese.
ImagingLanguage model60OpennessPulse-PPG
7345—Photoplethysmography foundation model pretrained on raw wearable signals from a field study, transferring across lab and field health tasks.
Biosignals64OpennessBrainfound
—4—Tsinghua University +2 othersJanuary 10, 2025contrastive_learningcross_modality_translationdiffusion+9Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.
ImagingLanguage model7OpennessProteinDT
107106—Text-guided protein design framework aligning language with sequences for text-conditioned generation, zero-shot editing, and property prediction.
Protein52OpennessECGFM-KED
4352—Knowledge-enhanced ECG foundation model aligning a ResNet encoder with LLM-generated disease descriptions for zero- and few-shot interpretation.
Biosignals30OpennessBrainIAC
13924—Self-supervised vision foundation model for structural brain MRI, providing a reusable encoder for brain age, survival, and image classification.
Imaging24OpennessSCimilarity
258125—Single-cell foundation model trained by metric learning to embed scRNA-seq profiles for cell type annotation and similarity search in cell atlases.
Single-cell78OpennessCryo-IEF
73——Cryo-EM foundation model pre-trained on 65 million particle images, enabling zero-shot classification, pose clustering, and quality assessment.
Imaging42OpennessDynaCLR
1023—Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.
Imaging71OpennessOrthrus
1291819.9KMamba-based mature RNA foundation model, contrastively trained on splice isoforms and 400+ mammalian species orthologs for mRNA property prediction.
RNA71OpennessD-BETA
3613120Singapore Management University +1 otherOctober 3, 2024autoencodercontrastive_learningecg_classification+6ECG foundation model pretrained on 12-lead waveforms paired with clinical reports, enabling label-efficient and zero-shot cardiac diagnosis.
BiosignalsLanguage model27OpennessDFMDock
557—Diffusion model for protein-protein docking that unifies pose sampling and energy-based ranking, works without MSAs, and generalizes to new targets.
Protein81OpennessTUMSyn
4526—Text-guided MRI synthesis model that generates brain MR sequences and resolutions on demand from routine scans using imaging-metadata prompts.
Imaging28Openness- Charité – Universitätsmedizin BerlinSeptember 11, 2024clinical_phenotypingcontrastive_learningcross_modal_retrieval+5
Multimodal contrastive model aligning clinical EEG with free-text reports, enabling zero-shot EEG classification from natural-language prompts.
BiosignalsLanguage model26Openness