All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 505–518 of 518 filtered models
GenSLM
142142—Genome-scale language model trained on prokaryotic genes and SARS-CoV-2 genomes to model viral evolution and flag emerging variants of concern.
DNA & Gene56OpennessEquiFold
12952—Protein structure prediction model pairing SE(3)-equivariant networks with a coarse-grained representation to fold sequences fast, without MSA inputs.
Protein46OpennessMoLFormer-XL
406595209.9KLarge-scale chemical language model trained on 1.1 billion SMILES strings using linear attention transformers for molecular property prediction.
Small molecule86Openness- Shenzhen Research Institute of Big Data +2 othersSeptember 15, 2022chest_x_rayfoundation_modelimage_text_retrieval+7
Medical vision-language pretraining framework that injects structured medical knowledge into radiology image-text learning for VQA and retrieval.
ImagingLanguage model29Openness CheXzero
234527—Self-supervised vision-language model for zero-shot detection of chest X-ray pathologies, trained on image-report pairs without explicit labels.
ImagingPathology70OpennessINTERACT
1125—Lieber Institute for Brain DevelopmentAugust 16, 2022deep_learningdna_methylationepigenomic_prediction+4Deep learning model predicting DNA methylation regulatory variants at CpG sites in the human brain, fine-mapping psychiatric disorder risk loci.
DNA & Gene9OpennessBERT6mA
516—BERT-based predictor of DNA N6-methyladenine (6mA) modification sites, using word2vec encoding and cross-species transfer learning.
DNA & Gene45OpennessCpG Transformer
3921—Transformer that imputes missing CpG methylation states from sparse single-cell bisulfite sequencing, modeling genomic and cell-level structure.
DNA & Gene79OpennessPubMedCLIP
1833116.7KMedical-domain CLIP fine-tuned on radiology image-caption pairs from ROCO, serving as a drop-in visual encoder for medical visual question answering.
PathologyLanguage model75OpennessGeneBERT
—27—Multi-modal self-supervised transformer for regulatory genomics, pre-trained on DNA sequence together with transcription factor binding matrices.
DNA & Gene18OpennessAlphaFold-Multimer
14.8K3.2K—Protein complex structure prediction model extending AlphaFold 2 with paired MSA processing and ipTM scoring for multi-chain, multimeric assemblies.
Protein59OpennessBig Bird
6333K341.8KSparse attention transformer that extends BERT to 8x longer sequences via random, local, and global attention, with genomic sequence applications.
DNA & Gene49OpennessAttentiveChrome
27101—Attention-based model predicting gene expression from histone modification signals across 56 cell types, with interpretable attention scores.
DNA & Gene80Openness