All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 457–480 of 552 filtered models
scPROTEIN
5533—Deep graph contrastive learning framework for single-cell proteomics embedding, handling peptide uncertainty, missingness, and batch effects.
Single-cell86OpennessscDiffusion
9465—Diffusion model for synthesizing single-cell RNA-seq data, with guided generation of specific cell types, rare cells, and developmental trajectories.
Single-cell60OpennessRfamGen
4260—Generative RNA design model that samples family sequences from a VAE latent space constrained by Rfam covariance models and consensus structure.
RNA10OpennessDerm Foundation
374631Google's dermatology image embedding model that produces 6144-dimensional embeddings for data-efficient skin-condition classifiers.
ImagingPath Foundation
—13104Histopathology foundation model that encodes 224x224 H&E patches into compact 384-dimensional embeddings for tumor and biomarker classifiers.
Pathology17OpennessBrant
4294—500M-parameter transformer model pretrained on intracranial SEEG recordings for neural signal forecasting, imputation, and seizure detection.
Biosignals75OpennessxTrimoGene
42349—Asymmetric encoder-decoder transformer for single-cell RNA-seq that encodes only non-zero genes, cutting FLOPs 10-100x versus standard transformers.
RNA10OpennessSelf-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.
Biosignals5OpennessHealth acoustics foundation model that turns short clips of coughs and breaths into embeddings for building acoustic biomarker models with less data.
BiosignalsBioCLIP
27024124.8KVision foundation model for the tree of life, trained on TreeOfLife-10M for zero-shot species classification of plants, animals, and fungi.
Imaging93OpennessUCE
312174—Single-cell foundation model producing species-agnostic cell embeddings by representing genes through frozen ESM-2 protein language model embeddings.
Single-cell65OpennessSegVol
386122747Promptable 3D foundation model for volumetric CT segmentation, covering over 200 anatomical categories through point, box, and free-text prompts.
Imaging100OpennessCellSAM
20843—Universal cell segmentation model adapting Meta's SAM to segment mammalian cells, yeast, and bacteria across imaging modalities without retraining.
Imaging32OpennessNeuro-GPT
22899—University of Southern California +1 otherNovember 7, 2023brain_computer_interfaceeegfoundation_model+5EEG foundation model that pairs a convolutional encoder with a GPT backbone, pretrained by masked-segment reconstruction for low-data BCI decoding.
Biosignals46OpennessProGen2
705——Protein language models from 151M to 6.4B parameters, trained on over a billion sequences for sequence generation and zero-shot fitness prediction.
Protein55OpennessSAM-Med3D
944182—Fully 3D promptable segmentation foundation model for volumetric CT and MR, encoding whole volumes so anatomy can be segmented from one prompt point.
Imaging96OpennessBioT5
127—191Encoder-decoder framework unifying molecules, proteins, and natural language with SELFIES notation for cross-modal drug discovery tasks.
Language modelSmall moleculeProtein74OpennessGPN-MSA
34990216DNA language model for variant effect prediction across coding and non-coding regions, using whole-genome alignments of 100 vertebrate species.
DNA & Gene87OpennessHelixFold-Single
1.1K91—MSA-free protein structure prediction that replaces multiple sequence alignments with a protein language model pre-trained on billions of sequences.
Protein12OpennessVisionFM
12958—Multi-modal ophthalmic foundation model for generalist eye AI, spanning fundus imaging and OCT for disease screening, segmentation, and biomarkers.
ImagingPathology14Openness