All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 457480 of 552 filtered models

  • scPROTEIN

    5533
    TencentAILabHealthcareJanuary 1, 2024foundation_model

    Deep graph contrastive learning framework for single-cell proteomics embedding, handling peptide uncertainty, missingness, and batch effects.

    Single-cell
    86Openness
  • Tsinghua UniversityJanuary 1, 2024diffusionfoundation_modelgenerative

    Diffusion model for synthesizing single-cell RNA-seq data, with guided generation of specific cell types, rare cells, and developmental trajectories.

    Single-cell
    60Openness
  • RfamGen

    4260
    Kyoto University +1 otherJanuary 1, 2024foundation_modelsequence_designvariational_autoencoder

    Generative RNA design model that samples family sequences from a VAE latent space constrained by Rfam covariance models and consensus structure.

    RNA
    10Openness
  • Google ResearchDecember 19, 2023cnncontrastive_learningdermatology+5

    Google's dermatology image embedding model that produces 6144-dimensional embeddings for data-efficient skin-condition classifiers.

    Imaging
  • Google ResearchDecember 19, 2023biomarker_predictioncancer_detectionembeddings+4

    Histopathology foundation model that encodes 224x224 H&E patches into compact 384-dimensional embeddings for tumor and biomarker classifiers.

    Pathology
    17Openness
  • ATOM-1

    18
    Atomic AIDecember 14, 2023chemical_mappingfoundation_modelstructure_prediction

    RNA foundation model trained on chemical mapping data, with embeddings adapted to predict RNA secondary and tertiary structure and mRNA stability.

    RNA
    6Openness
  • Brant

    4294
    Zhejiang UniversityDecember 10, 2023foundation_modelimputationintracranial_eeg+5

    500M-parameter transformer model pretrained on intracranial SEEG recordings for neural signal forecasting, imputation, and seizure detection.

    Biosignals
    75Openness
  • xTrimoGene

    42349
    BioMapDecember 10, 2023foundation_modelrepresentation_learning

    Asymmetric encoder-decoder transformer for single-cell RNA-seq that encodes only non-zero genes, cutting FLOPs 10-100x versus standard transformers.

    RNA
    10Openness
  • MMM

    11191
    Microsoft +1 otherDecember 10, 2023brain_computer_interfaceeegemotion_recognition+5

    EEG pretraining framework mapping any electrode montage to a unified topology for topology-agnostic representations that transfer across datasets.

    Biosignals
    60Openness
  • AppleDecember 8, 2023cardiovascularcnncontrastive_learning+6

    Self-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.

    Biosignals
    5Openness
  • Google ResearchDecember 4, 2023acoustic_biomarkersaudio_classificationautoencoder+6

    Health acoustics foundation model that turns short clips of coughs and breaths into embeddings for building acoustic biomarker models with less data.

    Biosignals
  • BioCLIP

    27024124.8K
    Imageomics InstituteNovember 30, 2023biodiversitycontrastive_learningfoundation_model+5

    Vision foundation model for the tree of life, trained on TreeOfLife-10M for zero-shot species classification of plants, animals, and fungi.

    Imaging
    93Openness
  • UCE

    312174
    Stanford UniversityNovember 29, 2023cross_speciesfoundation_modeltransformer+1

    Single-cell foundation model producing species-agnostic cell embeddings by representing genes through frozen ESM-2 protein language model embeddings.

    Single-cell
    65Openness
  • SegVol

    386122747
    Beijing Academy of Artificial IntelligenceNovember 22, 2023ctfoundation_modelmultimodal+4

    Promptable 3D foundation model for volumetric CT segmentation, covering over 200 anatomical categories through point, box, and free-text prompts.

    Imaging
    100Openness
  • CellSAM

    20843
    Van Valen LabNovember 20, 2023cell_biologyfoundation_modelsegmentation+2

    Universal cell segmentation model adapting Meta's SAM to segment mammalian cells, yeast, and bacteria across imaging modalities without retraining.

    Imaging
    32Openness
  • IgLM

    192130
    GrayLabNovember 15, 2023antibodyfoundation_modelimmunology+1

    Generative language model trained on 558 million antibody sequences for infilling-based design of CDR loops and full-length immunoglobulin sequences.

    Protein
    12Openness
  • Neuro-GPT

    22899
    University of Southern California +1 otherNovember 7, 2023brain_computer_interfaceeegfoundation_model+5

    EEG foundation model that pairs a convolutional encoder with a GPT backbone, pretrained by masked-segment reconstruction for low-data BCI decoding.

    Biosignals
    46Openness
  • GPN

    34931.7K
    Song LabOctober 31, 2023dnafoundation_modelgenomics+2

    DNA language model for genome-wide variant effect prediction, trained by masked language modeling on multispecies genomes with no labeled data.

    DNA & Gene
    93Openness
  • ProGen2

    705
    SalesforceOctober 30, 2023foundation_modelgenerativelanguage_model+1

    Protein language models from 151M to 6.4B parameters, trained on over a billion sequences for sequence generation and zero-shot fitness prediction.

    Protein
    55Openness
  • SAM-Med3D

    944182
    Shanghai AI LaboratoryOctober 23, 2023foundation_modelradiologysegmentation+3

    Fully 3D promptable segmentation foundation model for volumetric CT and MR, encoding whole volumes so anatomy can be segmented from one prompt point.

    Imaging
    96Openness
  • BioT5

    127191
    Renmin University of ChinaOctober 11, 2023drug_discoveryfoundation_modellanguage_model+1

    Encoder-decoder framework unifying molecules, proteins, and natural language with SELFIES notation for cross-modal drug discovery tasks.

    Language modelSmall moleculeProtein
    74Openness
  • GPN-MSA

    34990216
    UC BerkeleyOctober 11, 2023dnafoundation_modelgenomics+2

    DNA language model for variant effect prediction across coding and non-coding regions, using whole-genome alignments of 100 vertebrate species.

    DNA & Gene
    87Openness
  • PaddlePaddleOctober 9, 2023foundation_modelsingle_sequencestructure_prediction

    MSA-free protein structure prediction that replaces multiple sequence alignments with a protein language model pre-trained on billions of sequences.

    Protein
    12Openness
  • VisionFM

    12958
    Chinese University of Hong KongOctober 8, 2023biomarker_predictionfoundation_modeloct+3

    Multi-modal ophthalmic foundation model for generalist eye AI, spanning fundus imaging and OCT for disease screening, segmentation, and biomarkers.

    ImagingPathology
    14Openness