All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 2548 of 106 filtered models

  • Stanford UniversityApril 24, 2026bertde_novo_designdiffusion+5

    110M-parameter RNA language model that designs sequences from secondary structure, motif, and Gene Ontology constraints via discrete diffusion.

    RNA
    48Openness
  • University of VirginiaApril 19, 2026diffusiongenerativegraph_neural_network+5

    RNA inverse folding framework pairing a graph neural network predictor with a diffusion model, designing sequences from self-contained RNA units.

    RNA
    17Openness
  • SMILE

    Johns Hopkins UniversityApril 17, 2026diffusiongenerativehistology+2

    Schrödinger-bridge diffusion model for virtual multiplex staining, translating routine H&E histology into multiplex immunohistochemistry images.

    Pathology
    8Openness
  • ByteDance AI LabApril 8, 2026antibodyantibody_designde_novo_design+6

    464M-parameter structure prediction and design model that improves antibody-antigen complex accuracy over Protenix-v1 and adds generative VHH design.

    Protein
    81Openness
  • DISCO

    2103
    FutureHouse +2 othersApril 6, 2026all_atomcofactorde_novo_design+9

    Multimodal diffusion model that co-designs protein sequence and 3D structure around cofactors and small molecules for de novo heme enzyme design.

    Protein
    70Openness
  • Cold Spring Harbor LaboratoryApril 1, 2026de_novo_designdiffusiongene_expression+5

    Discrete diffusion model that designs regulatory DNA with tunable cell-type-specific activity and learns activity-predictive representations.

    DNA & Gene
    49Openness
  • Human Protein Atlas +1 otherMarch 31, 2026diffusionfoundation_modelgenerative+4

    Generative imaging model simulating single-cell fluorescence microscopy for all 12,800 human proteins in the Human Protein Atlas.

    Imaging
    51Openness
  • CLOP-DiT

    Third Military Medical UniversityMarch 30, 2026contrastive_learningdata_augmentationdiffusion+7

    Generates single-cell transcriptomes from structured biological metadata via contrastive language-omics pretraining and a diffusion transformer.

    Single-cell
    10Openness
  • DAMO AcademyMarch 26, 2026diffusionfoundation_modelgene_expression+4

    Virtual cell model using masked discrete diffusion over the whole transcriptome to simulate scRNA-seq perturbation responses across tissues.

    Single-cell
    21Openness
  • IDPForge

    162
    Chinese Academy of SciencesMarch 25, 2026conformational_ensembleconformational_ensemble_generationdiffusion+7

    Protein-language diffusion model generating all-atom conformational ensembles for intrinsically disordered proteins and disordered regions.

    Protein
    29Openness
  • Golab (SAIS Physics Lab)March 23, 2026diffusiondrug_discoveryfoundation_model+4

    Molecular foundation models pretrained on density functional theory data, encoding 3D geometry and quantum behavior for ADMET and drug discovery.

    Small molecule
    46Openness
  • ChironRNA

    University of VirginiaMarch 19, 2026diffusiongenerativegraph_neural_network+3

    All-atom E(3)-equivariant diffusion model that refines RNA structures by resolving steric clashes and completing missing atoms.

    RNA
    19Openness
  • ATMOS

    4
    MilaMarch 18, 2026conformation_generationdiffusionfoundation_model+5

    Generative foundation model that produces atom-level molecular dynamics trajectories for protein monomers and protein-ligand complexes.

    Protein
    11Openness
  • X-Cell

    1068
    Xaira TherapeuticsMarch 17, 2026crispr_perturbationdiffusionfoundation_model+4

    Diffusion language model with 4.9 billion parameters that predicts genome-wide CRISPRi perturbation responses in single-cell transcriptomes.

    Single-cell
    20Openness
  • AnewOmni

    842
    Tsinghua University +1 otherMarch 15, 2026antibodyde_novo_designdiffusion+6

    All-atom generative foundation model that designs small molecules, peptides, and nanobodies against a target binding site from a single checkpoint.

    ProteinSmall molecule
    63Openness
  • InversePep

    Keshav Memorial Engineering CollegeMarch 10, 2026diffusiongenerativegraph_neural_network+4

    Diffusion generative model for structure-based peptide inverse folding, pairing a geometric GNN encoder with a Transformer denoiser.

    Protein
    10Openness
  • D3LM

    142
    Renmin University of ChinaMarch 2, 2026diffusiondnafoundation_model+6

    DNA foundation model using masked discrete diffusion to unify bidirectional sequence understanding and de novo generation in one architecture.

    DNA & Gene
    58Openness
  • CellPace

    McGill UniversityFebruary 26, 2026cell_biologydiffusiongene_expression+5

    Temporal diffusion framework for single-cell developmental dynamics, interpolating and forecasting cell states from irregularly sampled time series.

    Single-cell
    9Openness
  • MilaFebruary 23, 2026diffusiongene_expressiongenerative+3

    Diffusion model predicting single-cell responses to genetic or drug perturbations, generating over distributions to capture population variability.

    Single-cell
    51Openness
  • University of BristolFebruary 19, 2026data_generationdiffusionfoundation_model+4

    Single-cell foundation model applying discrete diffusion directly to scRNA-seq counts, generating unconditional and perturbation-conditioned profiles.

    Single-cell
    10Openness
  • BioKinema

    3
    International Digital Economy AcademyFebruary 15, 2026conformational_samplingdiffusiondrug_discovery+5

    Diffusion model that generates continuous-time, all-atom biomolecular trajectories, reproducing conformational kinetics far more cheaply than MD.

    ProteinSmall molecule
    13Openness
  • Tsinghua UniversityFebruary 13, 2026chiralityde_novo_designdiffusion+5

    Latent diffusion model that designs D-peptide binders against native L-protein targets, generalizing across chirality via axial vector features.

    Protein
    67Openness
  • STPAINTER

    University of Science and Technology of China +2 othersFebruary 13, 2026cancerdiffusionfoundation_model+4

    Pan-cancer pretrained diffusion model imputing genome-wide expression from sparse spatial transcriptomics panels, zero-shot and reference-free.

    Spatial omicsSingle-cell
    4Openness
  • IsoDDE

    Isomorphic LabsFebruary 10, 2026binding_affinity_predictiondiffusiondrug_discovery+6

    Unified drug design engine for protein-ligand structure prediction, binding affinity estimation, and compound generation from Isomorphic Labs.

    Protein
    13Openness