All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 25–48 of 106 filtered models
110M-parameter RNA language model that designs sequences from secondary structure, motif, and Gene Ontology constraints via discrete diffusion.
RNA48OpennessRNA inverse folding framework pairing a graph neural network predictor with a diffusion model, designing sequences from self-contained RNA units.
RNA17OpennessSMILE
———Schrödinger-bridge diffusion model for virtual multiplex staining, translating routine H&E histology into multiplex immunohistochemistry images.
Pathology8OpennessProtenix-v2
2K7—464M-parameter structure prediction and design model that improves antibody-antigen complex accuracy over Protenix-v1 and adds generative VHH design.
Protein81OpennessDISCO
2103—Multimodal diffusion model that co-designs protein sequence and 3D structure around cofactors and small molecules for de novo heme enzyme design.
Protein70OpennessDiscrete diffusion model that designs regulatory DNA with tunable cell-type-specific activity and learns activity-predictive representations.
DNA & Gene49OpennessProtiCelli
241—Generative imaging model simulating single-cell fluorescence microscopy for all 12,800 human proteins in the Human Protein Atlas.
Imaging51OpennessCLOP-DiT
———Generates single-cell transcriptomes from structured biological metadata via contrastive language-omics pretraining and a diffusion transformer.
Single-cell10OpennessLingshu-Cell
—3—Virtual cell model using masked discrete diffusion over the whole transcriptome to simulate scRNA-seq perturbation responses across tissues.
Single-cell21OpennessIDPForge
162—Chinese Academy of SciencesMarch 25, 2026conformational_ensembleconformational_ensemble_generationdiffusion+7Protein-language diffusion model generating all-atom conformational ensembles for intrinsically disordered proteins and disordered regions.
Protein29OpennessSuiren-1.0
171—Molecular foundation models pretrained on density functional theory data, encoding 3D geometry and quantum behavior for ADMET and drug discovery.
Small molecule46OpennessChironRNA
———All-atom E(3)-equivariant diffusion model that refines RNA structures by resolving steric clashes and completing missing atoms.
RNA19OpennessX-Cell
1068—Diffusion language model with 4.9 billion parameters that predicts genome-wide CRISPRi perturbation responses in single-cell transcriptomes.
Single-cell20OpennessAnewOmni
842—All-atom generative foundation model that designs small molecules, peptides, and nanobodies against a target binding site from a single checkpoint.
ProteinSmall molecule63OpennessInversePep
———Diffusion generative model for structure-based peptide inverse folding, pairing a geometric GNN encoder with a Transformer denoiser.
Protein10OpennessD3LM
—142DNA foundation model using masked discrete diffusion to unify bidirectional sequence understanding and de novo generation in one architecture.
DNA & Gene58OpennessCellPace
———Temporal diffusion framework for single-cell developmental dynamics, interpolating and forecasting cell states from irregularly sampled time series.
Single-cell9OpennessPerturbDiff
547—Diffusion model predicting single-cell responses to genetic or drug perturbations, generating over distributions to capture population variability.
Single-cell51OpennessSingle-cell foundation model applying discrete diffusion directly to scRNA-seq counts, generating unconditional and perturbation-conditioned profiles.
Single-cell10OpennessBioKinema
—3—International Digital Economy AcademyFebruary 15, 2026conformational_samplingdiffusiondrug_discovery+5Diffusion model that generates continuous-time, all-atom biomolecular trajectories, reproducing conformational kinetics far more cheaply than MD.
ProteinSmall molecule13OpennessPepMirror
61—Latent diffusion model that designs D-peptide binders against native L-protein targets, generalizing across chirality via axial vector features.
Protein67OpennessSTPAINTER
———University of Science and Technology of China +2 othersFebruary 13, 2026cancerdiffusionfoundation_model+4Pan-cancer pretrained diffusion model imputing genome-wide expression from sparse spatial transcriptomics panels, zero-shot and reference-free.
Spatial omicsSingle-cell4OpennessIsoDDE
———Unified drug design engine for protein-ligand structure prediction, binding affinity estimation, and compound generation from Isomorphic Labs.
Protein13Openness