All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 106 filtered models

  • IgGM2

    Tencent AI for Life Science Lab +3 othersJuly 9, 2026antibodydiffusionfoundation_model+4

    All-atom foundation model for immune-receptor design that predicts structures and co-designs CDR sequences for antibodies, nanobodies, and TCRs.

    Protein
    32Openness
  • OpenDDE

    368
    AurekaJuly 4, 2026antibodyco_foldingdiffusion+2

    Open-source all-atom co-folding foundation model for protein-ligand, protein-protein, and antibody-antigen complex prediction in drug discovery.

    ProteinSmall molecule
    75Openness
  • CryoACE

    ShanghaiTech UniversityJune 30, 2026cryo_emdiffusionfoundation_model+2

    Atomic protein model building from cryo-EM density maps, resolving conformational heterogeneity through atom-centric sampling and diffusion.

    ProteinImaging
    38Openness
  • Pep2Mol

    University of FloridaJune 29, 2026de_novo_designdiffusiondrug_discovery+3

    Diffusion model for 3D small-molecule design against protein-protein interaction sites, guided by the natural binding peptide or protein partner.

    Small moleculeProtein
    10Openness
  • Sesame

    Tessel BiosciencesJune 22, 2026de_novo_designdiffusiondrug_discovery+3

    Diffusion model that generates 3D small molecules conditioned on protein pockets and partial fragments encoded as continuous spatial density maps.

    Small moleculeProtein
    15Openness
  • BoltzMol-1

    4.1K
    BoltzJune 16, 2026diffusiondrug_discoveryfoundation_model+4

    Small-molecule hit-discovery pipeline using Boltz-2 co-folding and affinity prediction to rank in-stock compounds or make-on-demand chemical space.

    Small moleculeProtein
    7Openness
  • TCRDiff

    7
    Monash UniversityJune 14, 2026antibodyde_novo_designdiffusion+5

    Conditional denoising diffusion model that designs antigen-specific TCR CDR3β sequences conditioned on peptide-MHC targets and germline V-genes.

    Protein
    75Openness
  • RDiffusion

    Zhejiang University +6 othersJune 13, 2026de_novo_designdiffusionfoundation_model+5

    Diffusion-based generative RNA model for de novo sequence design, conditioned on function, RNA family, structure, or binding proteins.

    RNA
    5Openness
  • HoloCell

    Beijing Zhongguancun AcademyJune 11, 2026cross_modal_generationdiffusionepigenomics+7

    860M-parameter generative single-cell foundation model that jointly represents and generates epigenomic, transcriptomic, and proteomic modalities.

    Single-cellDNA & Gene
    21Openness
  • Promera

    83
    MIT +1 otherJune 10, 2026antibodybinder_designdiffusion+5

    Unified all-atom generative model for biomolecular structure prediction, binder filtering, and controllable protein and nanobody design.

    Protein
    61Openness
  • CryoDiff

    Shandong UniversityJune 6, 2026cryo_emdiffusiongenerative+2

    Uncertainty-aware diffusion model that enhances cryo-EM density maps while estimating voxel-wise confidence via Monte Carlo sampling.

    Imaging
    20Openness
  • Institute for Protein Design +1 otherJune 4, 2026de_novo_designdiffusiongenerative+3

    Diffusion-based backbone generation and sequence design method for programmable asymmetric transmembrane beta-barrel nanopores.

    Protein
    17Openness
  • Emap2lig

    2
    Kihara Lab +1 otherJune 4, 2026atomic_modelingcryo_emdiffusion+6

    Cryo-EM ligand modeling pipeline that detects bound ligand densities in a map, then reconstructs their atomic structures with a diffusion model.

    ImagingSmall molecule
    25Openness
  • mRNAutilus

    1
    Atom Bioworks +3 othersMay 31, 2026de_novo_designdiffusionfoundation_model+5

    Masked discrete-diffusion model over millions of full-length mRNAs, steered by Monte Carlo tree search for joint codon optimization and UTR design.

    RNA
    7Openness
  • AMix-2

    Shanghai AI Laboratory +4 othersMay 30, 2026diffusionfold_classificationfoundation_model+6

    Protein-text foundation model placing amino acid sequences and natural language in one token space for protein understanding and de novo design.

    ProteinLanguage model
    10Openness
  • DCFold

    2
    Tsinghua UniversityMay 18, 2026binder_designdiffusionflow_matching+2

    Protein structure prediction and binder design in a single generative step, replacing AlphaFold3's iterative diffusion sampling with one forward pass.

    Protein
    16Openness
  • TD3B

    2
    Duke UniversityMay 15, 2026de_novo_designdiffusionfine_tuning+4

    Sequence-based discrete-diffusion framework that designs peptide binders with specified agonist or antagonist behavior against GPCR targets.

    Protein
    10Openness
  • ProtLiD

    6
    National University of SingaporeMay 15, 2026de_novo_designdiffusiongenerative+6

    370M-parameter ligand-conditioned discrete diffusion model that co-designs protein sequence and structure under explicit small-molecule constraints.

    Protein
    5Openness
  • MuseDrift

    University of Florida +1 otherMay 12, 2026de_novo_designdiffusiongenerative+3

    Conditional discrete diffusion model for protein variant generation, with a calibrated identity dial controlling drift from a wild-type sequence.

    Protein
    12Openness
  • PTM-dCN

    Shanghai Jiao Tong UniversityMay 11, 2026de_novo_designdiffusiongenerative+3

    Latent diffusion model for PTM-aware protein sequence design, using ControlNet-style conditioning to steer generation toward chosen PTM sites.

    Protein
    10Openness
  • MochiDiff

    University of Washington +1 otherMay 7, 2026antibodyantibody_designde_novo_design+6

    Discrete diffusion model for conditional antibody sequence design with germline-absorbing noising that focuses learning on somatic variation.

    Protein
    8Openness
  • A-CODE

    University of Illinois Urbana-Champaign +1 otherMay 5, 2026binder_designde_novo_designdiffusion+4

    All-atom protein co-design model that generates sequence and structure together in one unified diffusion process, aimed at hard binder design.

    Protein
    8Openness
  • Proteo-R1

    6453.2K
    Stanford University +3 othersMay 1, 2026antibodyde_novo_designdiffusion+5

    Reasoning-guided foundation model for de novo antibody CDR design, pairing a multimodal LLM understanding expert with a Boltz-1 diffusion expert.

    Protein
    53Openness
  • CoMole

    University of Notre DameMay 1, 2026de_novo_designdiffusiondrug_discovery+7

    Motif-aware graph diffusion model for controllable molecular generation that adapts to unseen properties by learning a lightweight task embedding.

    Small molecule
    23Openness