All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 2548 of 72 filtered models

  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that averages tiny, medium, and large 3D U-Nets pretrained on simulated tomograms and fine-tuned on experimental data.

    Imaging
    86Openness
  • Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking ensemble of three 3D segmentation models predicting particle-center heatmaps with ResNet50d and EfficientNetV2-M backbones.

    Imaging
    95Openness
  • TopCUP

    3
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model, an ensemble of 3D U-Nets with EfficientNet encoders that finds protein complexes in tomograms by heatmap segmentation.

    Imaging
    96Openness
  • BPD

    2
    Chan Zuckerberg InitiativeFebruary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes six protein complexes in tomograms using an ensemble of lightweight 3D U-Nets.

    Imaging
    67Openness
  • Borzoi

    256256
    Calico Life SciencesJanuary 9, 2025cnngene_expressionregulatory_genomics+5

    Regulatory genomics model predicting cell-type-specific RNA-seq coverage from DNA sequence, unifying transcription, splicing, and polyadenylation.

    DNA & Gene
    92Openness
  • CryoLens

    19
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etgenerative+6

    Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.

    Imaging
    74Openness
  • Octopi

    13
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.

    Imaging
    81Openness
  • ECGFM-KED

    4352
    Shanghai Jiao Tong UniversityDecember 18, 2024cardiologycnncontrastive_learning+7

    Knowledge-enhanced ECG foundation model aligning a ResNet encoder with LLM-generated disease descriptions for zero- and few-shot interpretation.

    Biosignals
    30Openness
  • BME-X

    6876
    University of North Carolina at Chapel HillDecember 5, 2024cnndenoisingfoundation_model+5

    Tissue-aware foundation model that restores brain MRI quality across motion correction, super-resolution, denoising, and harmonization.

    Imaging
    70Openness
  • RelCon

    3430
    Apple +2 othersNovember 27, 2024activity_recognitioncnncontrastive_learning+4

    Motion foundation model for wearable accelerometry, trained with relative contrastive learning on 1B segments from 87,376 participants.

    Biosignals
    48Openness
  • German Cancer Research Center (DKFZ) +5 othersOctober 30, 2024brain_mricnnfoundation_model+7

    Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.

    Imaging
    45Openness
  • PaPaGei

    17481
    Nokia Bell LabsOctober 27, 2024bias_evaluationcardiovascular_healthcnn+5

    Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.

    Biosignals
    67Openness
  • DynaCLR

    1023
    Chan Zuckerberg InitiativeOctober 15, 2024cell_biologycell_state_classificationcnn+5

    Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.

    Imaging
    71Openness
  • ECGFounder

    14234121
    Peking University +2 othersOctober 5, 2024arrhythmia_detectioncardiologycnn+6

    Convolutional ECG foundation model trained on expert annotations spanning 150 diagnostic categories, with 12-lead and single-lead wearable variants.

    Biosignals
    75Openness
  • TUMSyn

    4526
    ShanghaiTech University +2 othersSeptember 25, 2024cnncontrastive_learningfoundation_model+6

    Text-guided MRI synthesis model that generates brain MR sequences and resolutions on demand from routine scans using imaging-metadata prompts.

    Imaging
    28Openness
  • Georgia Institute of Technology +1 otherAugust 12, 2024cnncontrastive_learningfoundation_model+3

    Foundation model for photoplethysmography (PPG) that learns quality-robust waveform representations for heart rate, blood pressure, and AF detection.

    Biosignals
    36Openness
  • Google ResearchAugust 2, 2024chest_radiographycnncontrastive_learning+9

    Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.

    Imaging
  • MIT CSAIL +1 otherJuly 16, 2024cnnfoundation_modelinteractive_segmentation+5

    Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.

    Imaging
    63Openness
  • Mahmood LabJune 23, 2024cnnhistologyimage_preprocessing+2

    DeepLabV3 segmentation model that separates tissue from glass background in H&E and IHC whole-slide images, as used by the HEST-Library.

    Pathology
    11Openness
  • VISTA3D

    292776.6K
    NVIDIAJune 7, 2024cnnctfoundation_model+5

    Medical image segmentation foundation model for 3D CT and MRI, covering 127 anatomical classes automatically plus interactive point-prompt refinement.

    Imaging
    73Openness
  • SleepFM

    17556
    Stanford UniversityMay 28, 2024cnncontrastive_learningcross_modal_retrieval+3

    Multi-modal foundation model for sleep analysis, learning joint representations across brain, cardiac, and respiratory polysomnography signals.

    Biosignals
    76Openness
  • BrainMorph

    57
    Cornell University +3 othersMay 22, 2024brain_mricnnfoundation_model+3

    Keypoint-based foundation model for brain MRI registration, pretrained on over 100,000 3D volumes for rigid, affine, and deformable alignment.

    Imaging
    85Openness
  • Mammo-CLIP

    9845
    Boston University +1 otherMay 20, 2024bertbreast_cancercancer_detection+8

    Vision-language foundation model pre-trained on screening mammogram-report pairs to improve data efficiency and robustness in breast cancer detection.

    ImagingPathology
    27Openness
  • MoME

    3125
    Beijing Institute of Technology +3 othersMay 16, 2024brain_mricnncurriculum_learning+7

    Universal brain lesion segmentation for multi-modal brain MRI, using a Mixture of Modality Experts to span diverse modalities and lesion types.

    Imaging
    79Openness