All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 25–48 of 72 filtered models
Cryo-ET particle picking model that averages tiny, medium, and large 3D U-Nets pretrained on simulated tomograms and fine-tuned on experimental data.
Imaging86OpennessMonjuDetectHM
211—Cryo-ET particle picking ensemble of three 3D segmentation models predicting particle-center heatmaps with ResNet50d and EfficientNetV2-M backbones.
Imaging95OpennessTopCUP
3——Cryo-ET particle picking model, an ensemble of 3D U-Nets with EfficientNet encoders that finds protein complexes in tomograms by heatmap segmentation.
Imaging96OpennessBPD
2——Cryo-ET particle picking model that localizes six protein complexes in tomograms using an ensemble of lightweight 3D U-Nets.
Imaging67OpennessBorzoi
256256—Regulatory genomics model predicting cell-type-specific RNA-seq coverage from DNA sequence, unifying transcription, splicing, and polyadenylation.
DNA & Gene92OpennessCryoLens
19——Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.
Imaging74OpennessOctopi
13——Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.
Imaging81OpennessECGFM-KED
4352—Knowledge-enhanced ECG foundation model aligning a ResNet encoder with LLM-generated disease descriptions for zero- and few-shot interpretation.
Biosignals30OpennessBME-X
6876—Tissue-aware foundation model that restores brain MRI quality across motion correction, super-resolution, denoising, and harmonization.
Imaging70OpennessSpark3D (S3D)
1573936Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.
Imaging45OpennessPaPaGei
17481—Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.
Biosignals67OpennessDynaCLR
1023—Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.
Imaging71OpennessECGFounder
14234121Convolutional ECG foundation model trained on expert annotations spanning 150 diagnostic categories, with 12-lead and single-lead wearable variants.
Biosignals75OpennessTUMSyn
4526—Text-guided MRI synthesis model that generates brain MR sequences and resolutions on demand from routine scans using imaging-metadata prompts.
Imaging28OpennessSiamQuality
181—Foundation model for photoplethysmography (PPG) that learns quality-robust waveform representations for heart rate, blood pressure, and AF detection.
Biosignals36OpennessCXR Foundation
19982199Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.
ImagingScribblePrompt
22066—Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.
Imaging63OpennessHEST Tissue Segmentation
422161—DeepLabV3 segmentation model that separates tissue from glass background in H&E and IHC whole-slide images, as used by the HEST-Library.
Pathology11OpennessSleepFM
17556—Multi-modal foundation model for sleep analysis, learning joint representations across brain, cardiac, and respiratory polysomnography signals.
Biosignals76OpennessBrainMorph
57——Keypoint-based foundation model for brain MRI registration, pretrained on over 100,000 3D volumes for rigid, affine, and deformable alignment.
Imaging85OpennessMammo-CLIP
98—45Vision-language foundation model pre-trained on screening mammogram-report pairs to improve data efficiency and robustness in breast cancer detection.
ImagingPathology27OpennessMoME
3125—Universal brain lesion segmentation for multi-modal brain MRI, using a Mixture of Modality Experts to span diverse modalities and lesion types.
Imaging79Openness