All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 385–408 of 552 filtered models
CXR Foundation
19982199Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.
ImagingPINNACLE
1095—Geometric deep learning model generating context-aware protein representations across 156 cell-type contexts from a multi-organ single-cell atlas.
Single-cell83OpennessBioT5+
127—415Text-to-text biological language model spanning molecules, proteins, and text, adding IUPAC names and multi-task instruction tuning to BioT5.
Language modelSmall moleculeProtein85OpennessMedical SAM 2
933257—SAM2-based foundation model that segments 2D and 3D medical images by treating volumes and image sets as video object tracking.
Imaging74OpennessUSFM
350112—Ultrasound foundation model pretrained on over two million multi-organ images, transferring to segmentation, classification, and image enhancement.
Imaging22OpennessscPRINT
15555—Single-cell foundation model pre-trained on 50 million cells for gene network inference, denoising, and cell type prediction.
Single-cell90OpennessCell2Sentence
87486865Framework turning single-cell expression profiles into ranked gene-name sequences, letting off-the-shelf language models generate and annotate cells.
Single-cell74OpennessScribblePrompt
22066—Interactive foundation model for biomedical image segmentation, prompted with scribbles, clicks, and bounding boxes to segment unseen structures.
Imaging63OpennessH-optimus-0
110647.1KHistopathology vision transformer with 1.1B parameters, pretrained on patches from 500,000 H&E whole-slide images across 4,000 clinical practices.
Pathology40OpennessPathChat
—478—Multimodal vision-language copilot for pathology that answers open-ended questions about histology images and reasons about differential diagnoses.
PathologyLanguage model35OpennessscVI (CELLxGENE Census)
1.7K2.4K—Variational autoencoder pretrained on 74 million human single-cell transcriptomes from the CELLxGENE Census for batch correction and cell typing.
Single-cell96OpennessCryoViT
125—Semi-supervised cryo-ET segmentation framework that adapts DINOv2 vision transformers for 3D organelle annotation using sparse 2D slice labels.
Imaging45OpennessCREMA
—7—Self-supervised foundation model for 12-lead ECG, pairing masked autoencoder pretraining with contrastive regularization for robust diagnostics.
Biosignals10OpennessESM-3
2.9K31313.2KMultimodal generative protein language model reasoning jointly over protein sequence, structure, and function, trained at 98B parameters.
Protein27OpennessOPERA
8346—Respiratory acoustic foundation models pretrained on roughly 136K cough and breathing recordings for disease detection and lung function estimation.
Biosignals59OpennessBrainSegFounder
1575—3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.
Imaging51OpennessCompute-Optimal PLM
1138—Scaling-law study of protein language models identifying compute-optimal training for causal and masked objectives on 939 million protein sequences.
Protein22OpennessCellFM
11078—Single-cell foundation model with 800M parameters trained on ~100 million human cells, for annotation, perturbation prediction, and gene analysis.
Single-cell26OpennessscFoundation
423596—Single-cell transcriptomics foundation model with 100 million parameters, pretrained on over 50 million human scRNA-seq profiles for cell embeddings.
Single-cell57OpennessProt2Token
3810—Multi-task protein framework recasting function, binding site, and structure prediction as autoregressive next-token prediction over ESM2 embeddings.
Protein13OpennessProTrek
2102441Tri-modal protein language model aligning sequence, structure, and text in one embedding space for natural-language search over billions of proteins.
Protein66Openness