All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 361–384 of 518 filtered models
seqLens
7——Genomic language models with disentangled attention, pretrained on prokaryotic and eukaryotic genomes for sequence classification and variant effects.
DNA & Gene18OpennessBEPH
7797—Histopathology foundation model pretrained with BEiT masked image modeling on 11M+ tissue image tiles for cancer diagnosis and survival prediction.
Pathology73Openness- National University of Singapore +1 otherMarch 8, 2025cardiologyclinical_reasoningdiagnosis_grounding+7
Multimodal LLM unifying 12-lead ECG time series, ECG images, and text for grounded, clinician-aligned electrocardiogram interpretation.
BiosignalsLanguage model79Openness FoldMatch
11——Protein structure embedding model that compresses each 3D fold into a single fixed-length vector for proteome-wide similarity search and clustering.
Protein23OpennessTEDDY
—9—Single-cell RNA-seq foundation models combining masked modeling with ontology supervision to classify cell states across unseen donors and diseases.
Single-cell46OpennessMedVLM-R1
321921K2B-parameter medical vision-language model that uses reinforcement learning to show interpretable reasoning for radiology visual question answering.
ImagingLanguage model83OpennessBrain2Qwerty
871——Brain-to-text decoder that reconstructs typed sentences from non-invasive MEG and EEG brain recordings using a CNN, transformer, and language model.
Biosignals11OpennessSpatialEx
38——Jilin University +1 otherFebruary 23, 2025contrastive_learningfoundation_modelgene_expression_prediction+6Histology-anchored framework pairing an H&E foundation model with a cellular hypergraph to predict single-cell multi-omics from tissue images.
Spatial omicsPathology57OpennessFetalCLIP
7022—Mohamed bin Zayed University of Artificial Intelligence +1 otherFebruary 20, 2025classificationcontrastive_learningfoundation_model+7Vision-language foundation model for fetal ultrasound, pretrained on 210,035 image-text pairs for plane classification, biometry, and segmentation.
Imaging13OpennessLLaVA-Rad
5874573Chest X-ray vision-language model that drafts the findings section of a radiology report, at 7B parameters small enough to run on a single GPU.
ImagingLanguage model35OpennessRIME
———RNA-RNA interaction prediction framework that scores pairing between long transcripts directly from sequence using Nucleotide Transformer embeddings.
RNA14OpennessHeartLang
5646—ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.
Biosignals78OpennessHealthGPT
1.6K11638Zhejiang University +4 othersFebruary 14, 2025histologyimage_reconstructionmedical_image_generation+7Medical vision-language model that unifies image comprehension and generation in one autoregressive transformer via heterogeneous LoRA adapters.
PathologyImaging68Openness- Rensselaer Polytechnic Institute +2 othersFebruary 11, 2025chest_ctdisease_classificationfoundation_model+7
865M-parameter multimodal foundation model that fuses 3D low-dose chest CT with clinical data to answer 17 lung cancer screening questions.
Imaging71Openness M3FM
1938—Multimodal medical imaging foundation model for zero-shot clinical diagnosis and report generation from chest X-ray and CT in English and Chinese.
ImagingLanguage model60OpennessGenomeOcean
150241K4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.
DNA & Gene49OpennessECG-LM
—42—Multimodal ECG language model pairing a specialized signal encoder with a biomedical LLM for cardiovascular disease detection and question answering.
BiosignalsLanguage model24OpennessSNPBag
15——Genomics foundation model for genome-scale SNP analysis, handling imputation, phasing, ancestry, and relatedness from one 0.8B-parameter checkpoint.
DNA & Gene29OpennessTrASPr
—13—Multi-transformer model that predicts tissue-specific alternative splicing outcomes and generalizes zero-shot to unseen cellular conditions.
RNA33OpennessEndoChat
514424Chinese University of Hong Kong +5 othersJanuary 20, 2025endoscopygrounded_dialogueinstruction_tuning+6Grounded multimodal language model for endoscopic surgery, supporting visual dialogue, region-based question answering, and bounding-box grounding.
ImagingLanguage model22OpennessBrainfound
—4—Tsinghua University +2 othersJanuary 10, 2025contrastive_learningcross_modality_translationdiffusion+9Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.
ImagingLanguage model7OpennessBorzoi
256256—Regulatory genomics model predicting cell-type-specific RNA-seq coverage from DNA sequence, unifying transcription, splicing, and polyadenylation.
DNA & Gene92OpennessMUSK
240283—Vision-language foundation model for precision oncology, pretrained on 50M pathology images and 1B text tokens via unified masked modeling.
PathologyLanguage model12OpennessWearable accelerometry foundation model distilled from a PPG encoder, predicting cardiovascular and health biomarkers from motion signals alone.
Biosignals5Openness