All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 361384 of 518 filtered models

  • seqLens

    7
    George Washington UniversityMarch 12, 2025bertfoundation_modelgenomics+7

    Genomic language models with disentangled attention, pretrained on prokaryotic and eukaryotic genomes for sequence classification and variant effects.

    DNA & Gene
    18Openness
  • BEPH

    7797
    Shanghai Jiao Tong UniversityMarch 10, 2025cancer_diagnosiscancer_subtypingfoundation_model+7

    Histopathology foundation model pretrained with BEiT masked image modeling on 11M+ tissue image tiles for cancer diagnosis and survival prediction.

    Pathology
    73Openness
  • National University of Singapore +1 otherMarch 8, 2025cardiologyclinical_reasoningdiagnosis_grounding+7

    Multimodal LLM unifying 12-lead ECG time series, ECG images, and text for grounded, clinician-aligned electrocardiogram interpretation.

    BiosignalsLanguage model
    79Openness
  • FoldMatch

    11
    RCSB Protein Data Bank +1 otherMarch 6, 2025embeddingsrepresentation_learningstructural_biology+2

    Protein structure embedding model that compresses each 3D fold into a single fixed-length vector for proteome-wide similarity search and clustering.

    Protein
    23Openness
  • TEDDY

    9
    Merck & Co.March 5, 2025cell_type_annotationdisease_classificationfoundation_model+3

    Single-cell RNA-seq foundation models combining masked modeling with ontology supervision to classify cell states across unseen donors and diseases.

    Single-cell
    46Openness
  • MedVLM-R1

    321921K
    Technical University of Munich +2 othersFebruary 26, 2025medical_reasoningmultimodalradiology+4

    2B-parameter medical vision-language model that uses reinforcement learning to show interpretable reasoning for radiology visual question answering.

    ImagingLanguage model
    83Openness
  • Brain2Qwerty

    871
    Meta AI +1 otherFebruary 24, 2025brain_to_text_decodingcnneeg+3

    Brain-to-text decoder that reconstructs typed sentences from non-invasive MEG and EEG brain recordings using a CNN, transformer, and language model.

    Biosignals
    11Openness
  • SpatialEx

    38
    Jilin University +1 otherFebruary 23, 2025contrastive_learningfoundation_modelgene_expression_prediction+6

    Histology-anchored framework pairing an H&E foundation model with a cellular hypergraph to predict single-cell multi-omics from tissue images.

    Spatial omicsPathology
    57Openness
  • FetalCLIP

    7022
    Mohamed bin Zayed University of Artificial Intelligence +1 otherFebruary 20, 2025classificationcontrastive_learningfoundation_model+7

    Vision-language foundation model for fetal ultrasound, pretrained on 210,035 image-text pairs for plane classification, biometry, and segmentation.

    Imaging
    13Openness
  • LLaVA-Rad

    5874573
    Microsoft ResearchFebruary 20, 2025chest_x_rayfoundation_modelimage_text_retrieval+5

    Chest X-ray vision-language model that drafts the findings section of a radiology report, at 7B parameters small enough to run on a single GPU.

    ImagingLanguage model
    35Openness
  • RIME

    Italian Institute of TechnologyFebruary 16, 2025embeddingsrnatransfer_learning+1

    RNA-RNA interaction prediction framework that scores pairing between long transcripts directly from sequence using Nucleotide Transformer embeddings.

    RNA
    14Openness
  • HeartLang

    5646
    Peking UniversityFebruary 15, 2025arrhythmia_detectionecg_classificationelectrocardiogram+5

    ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.

    Biosignals
    78Openness
  • HealthGPT

    1.6K11638
    Zhejiang University +4 othersFebruary 14, 2025histologyimage_reconstructionmedical_image_generation+7

    Medical vision-language model that unifies image comprehension and generation in one autoregressive transformer via heterogeneous LoRA adapters.

    PathologyImaging
    68Openness
  • Rensselaer Polytechnic Institute +2 othersFebruary 11, 2025chest_ctdisease_classificationfoundation_model+7

    865M-parameter multimodal foundation model that fuses 3D low-dose chest CT with clinical data to answer 17 lung cancer screening questions.

    Imaging
    71Openness
  • M3FM

    1938
    University of Oxford +6 othersFebruary 6, 2025chest_x_rayclipcontrastive_learning+9

    Multimodal medical imaging foundation model for zero-shot clinical diagnosis and report generation from chest X-ray and CT in English and Chinese.

    ImagingLanguage model
    60Openness
  • DOE Joint Genome Institute +6 othersFebruary 5, 2025de_novo_designfoundation_modelgenerative+6

    4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.

    DNA & Gene
    49Openness
  • ECG-LM

    42
    Tsinghua University +1 otherFebruary 4, 2025cardiologycardiovascular_disease_detectioncnn+6

    Multimodal ECG language model pairing a specialized signal encoder with a biomedical LLM for cardiovascular disease detection and question answering.

    BiosignalsLanguage model
    24Openness
  • SNPBag

    15
    Zhejiang LabJanuary 29, 2025embeddingsfoundation_modelgenomics+3

    Genomics foundation model for genome-scale SNP analysis, handling imputation, phasing, ancestry, and relatedness from one 0.8B-parameter checkpoint.

    DNA & Gene
    29Openness
  • TrASPr

    13
    University of PennsylvaniaJanuary 20, 2025splicingsplicing_predictiontransformer+1

    Multi-transformer model that predicts tissue-specific alternative splicing outcomes and generalizes zero-shot to unseen cellular conditions.

    RNA
    33Openness
  • EndoChat

    514424
    Chinese University of Hong Kong +5 othersJanuary 20, 2025endoscopygrounded_dialogueinstruction_tuning+6

    Grounded multimodal language model for endoscopic surgery, supporting visual dialogue, region-based question answering, and bounding-box grounding.

    ImagingLanguage model
    22Openness
  • Brainfound

    4
    Tsinghua University +2 othersJanuary 10, 2025contrastive_learningcross_modality_translationdiffusion+9

    Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.

    ImagingLanguage model
    7Openness
  • Borzoi

    256256
    Calico Life SciencesJanuary 9, 2025cnngene_expressionregulatory_genomics+5

    Regulatory genomics model predicting cell-type-specific RNA-seq coverage from DNA sequence, unifying transcription, splicing, and polyadenylation.

    DNA & Gene
    92Openness
  • MUSK

    240283
    Stanford University +1 otherJanuary 8, 2025cross_modal_retrievalfoundation_modelhistology+9

    Vision-language foundation model for precision oncology, pretrained on 50M pathology images and 1B text tokens via unified masked modeling.

    PathologyLanguage model
    12Openness
  • AppleDecember 15, 2024activity_recognitionbiomarker_predictioncardiovascular_health+6

    Wearable accelerometry foundation model distilled from a PPG encoder, predicting cardiovascular and health biomarkers from motion signals alone.

    Biosignals
    5Openness