All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 337360 of 552 filtered models

  • AIDO.DNA

    1681783
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    DNA foundation model scaling an encoder-only transformer to 7 billion parameters for variant effect prediction, gene expression, and sequence design.

    DNA & Gene
    27Openness
  • ESM Cambrian

    2.9K1.5K
    EvolutionaryScaleDecember 1, 2024foundation_modelrepresentation_learningtransformer

    Protein language model family at 300M, 600M, and 6B parameters, purpose-built for representation learning and outperforming ESM-2 at smaller scale.

    Protein
    16Openness
  • genbio.aiNovember 29, 2024foundation_modellanguage_modelmixture_of_experts+6

    Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.

    Protein
    29Openness
  • TITAN

    357218118.2K
    Mahmood Lab +3 othersNovember 29, 2024cross_modal_retrievalfoundation_modelhistology+4

    Slide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.

    Pathology
    21Openness
  • AIDO.Cell

    16817108
    genbio.aiNovember 28, 2024bertcell_biologycell_type_annotation+7

    Single-cell RNA-seq foundation model pretrained on 50 million human cells, encoding the full transcriptome for annotation and perturbation modeling.

    Single-cell
    29Openness
  • AIDO.RNA

    168261.1K
    genbio.aiNovember 28, 2024bertfoundation_modellanguage_model+7

    RNA foundation model with 1.6 billion parameters, pretrained on 42 million non-coding RNA sequences for structure prediction and RNA sequence design.

    RNA
    18Openness
  • RelCon

    3430
    Apple +2 othersNovember 27, 2024activity_recognitioncnncontrastive_learning+4

    Motion foundation model for wearable accelerometry, trained with relative contrastive learning on 1B segments from 87,376 participants.

    Biosignals
    48Openness
  • UltraSam

    13633
    University of StrasbourgNovember 25, 2024foundation_modelimage_classificationsegmentation+3

    Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.

    Imaging
    26Openness
  • SCimilarity

    258125
    GenentechNovember 20, 2024autoencodercell_type_annotationcontrastive_learning+3

    Single-cell foundation model trained by metric learning to embed scRNA-seq profiles for cell type annotation and similarity search in cell atlases.

    Single-cell
    78Openness
  • BiomedParse

    686170548
    Microsoft ResearchNovember 18, 2024foundation_modelmedical_imagingmultimodal+4

    Biomedical imaging foundation model that segments, detects, and recognizes structures across nine modalities from natural language prompts.

    Imaging
    60Openness
  • AnyECG

    45
    Zhejiang University +3 othersNovember 17, 2024anomaly_detectionarrhythmia_classificationelectrocardiogram+6

    ECG foundation model that learns discrete rhythm tokens from noisy real-world recordings for arrhythmia classification and anomaly detection.

    Biosignals
    10Openness
  • Evo

    1.5K2501.8K
    Arc InstituteNovember 15, 2024dnafoundation_modelgenomics+2

    Genomic foundation model with 7B parameters that models prokaryotic DNA, RNA, and protein at single-nucleotide resolution over a 131k-token context.

    DNA & Gene
    70Openness
  • Boltz-1

    4.1K432
    MITNovember 14, 2024drug_discoveryfoundation_modelprotein_protein_interaction+1

    Open-source structure prediction model for proteins, nucleic acids, and small molecules, trained on public data to AlphaFold3-level accuracy.

    Protein
    97Openness
  • Recursion PharmaceuticalsNovember 12, 2024cell_paintingdrug_discoveryfoundation_model+4

    Cell Painting microscopy foundation model, a channel-agnostic masked autoencoder producing morphological embeddings for zero-shot phenotypic analysis.

    Imaging
    26Openness
  • Earth Species ProjectNovember 11, 2024audio_captioningbioacousticsfoundation_model+5

    Audio-language foundation model for bioacoustics that answers natural-language questions about animal sounds, with zero-shot species classification.

    BiosignalsLanguage model
    61Openness
  • p-IgGen

    13297
    Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5

    Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.

    Protein
    68Openness
  • Cryo-IEF

    73
    Westlake UniversityNovember 6, 2024contrastive_learningcryo_emfoundation_model+3

    Cryo-EM foundation model pre-trained on 65 million particle images, enabling zero-shot classification, pose clustering, and quality assessment.

    Imaging
    42Openness
  • Van Valen LabNovember 3, 2024cell_phenotypingfoundation_modelspatial_proteomics+2

    Cell phenotyping model for spatial proteomics using a language-informed vision transformer to classify cell types zero-shot across marker panels.

    ImagingSpatial omics
    33Openness
  • RhoFold+

    243216962
    ml4bioNovember 1, 2024foundation_modellanguage_modelstructure_prediction+1

    End-to-end RNA 3D structure prediction from sequence alone, coupling the RNA-FM language model with an Invariant Point Attention structure module.

    RNA
    65Openness
  • Microsoft ResearchOctober 31, 2024embeddingsfoundation_model

    Protein language model that captures short- and long-range residue co-evolution through a dual pre-training objective, at 3B parameters.

    Protein
    10Openness
  • German Cancer Research Center (DKFZ) +5 othersOctober 30, 2024brain_mricnnfoundation_model+7

    Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.

    Imaging
    45Openness
  • scGenePT

    3113
    Chan Zuckerberg InitiativeOctober 28, 2024foundation_modelgene_expressionmultimodal+4

    Single-cell perturbation prediction model that adds gene-level language embeddings from NCBI, UniProt, and Gene Ontology to scGPT representations.

    Single-cell
    90Openness
  • MAMMAL

    11891K
    IBM ResearchOctober 28, 2024cell_type_annotationdrug_discoveryfoundation_model+7

    Multi-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.

    ProteinSmall moleculeSingle-cell
    74Openness
  • SS-CXR

    13
    Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3

    Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.

    Imaging
    22Openness