All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 337–360 of 552 filtered models
ESM Cambrian
2.9K—1.5KProtein language model family at 300M, 600M, and 6B parameters, purpose-built for representation learning and outperforming ESM-2 at smaller scale.
Protein16OpennessAIDO.Protein
1682290Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.
Protein29OpennessTITAN
357218118.2KSlide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.
Pathology21OpennessUltraSam
13633—Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.
Imaging26OpennessSCimilarity
258125—Single-cell foundation model trained by metric learning to embed scRNA-seq profiles for cell type annotation and similarity search in cell atlases.
Single-cell78OpennessBiomedParse
686170548Biomedical imaging foundation model that segments, detects, and recognizes structures across nine modalities from natural language prompts.
Imaging60OpennessAnyECG
45—Zhejiang University +3 othersNovember 17, 2024anomaly_detectionarrhythmia_classificationelectrocardiogram+6ECG foundation model that learns discrete rhythm tokens from noisy real-world recordings for arrhythmia classification and anomaly detection.
Biosignals10OpennessEvo
1.5K2501.8KGenomic foundation model with 7B parameters that models prokaryotic DNA, RNA, and protein at single-nucleotide resolution over a 131k-token context.
DNA & Gene70OpennessOpenPhenom-S/16
78888.9KCell Painting microscopy foundation model, a channel-agnostic masked autoencoder producing morphological embeddings for zero-shot phenotypic analysis.
Imaging26OpennessNatureLM-audio
99551.9KAudio-language foundation model for bioacoustics that answers natural-language questions about animal sounds, with zero-shot species classification.
BiosignalsLanguage model61Opennessp-IgGen
13297Oxford Protein Informatics Group (OPIG) +1 otherNovember 9, 2024antibodyde_novo_designfoundation_model+5Antibody language model that generates paired heavy and light variable domains, with a developability-conditioned variant for manufacturable designs.
Protein68OpennessCryo-IEF
73——Cryo-EM foundation model pre-trained on 65 million particle images, enabling zero-shot classification, pose clustering, and quality assessment.
Imaging42OpennessDeepCell Types
910—Cell phenotyping model for spatial proteomics using a language-informed vision transformer to classify cell types zero-shot across marker panels.
ImagingSpatial omics33OpennessSFM-Protein
—3—Protein language model that captures short- and long-range residue co-evolution through a dual pre-training objective, at 3B parameters.
Protein10OpennessSpark3D (S3D)
1573936Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.
Imaging45OpennessscGenePT
3113—Single-cell perturbation prediction model that adds gene-level language embeddings from NCBI, UniProt, and Gene Ontology to scGPT representations.
Single-cell90OpennessMAMMAL
11891KMulti-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.
ProteinSmall moleculeSingle-cell74OpennessSS-CXR
—13—Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.
Imaging22Openness