All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 289312 of 552 filtered models

  • UniBiomed

    7210119
    Hong Kong University of Science and Technology +2 othersApril 30, 2025foundation_modelhistologymultimodal+6

    Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.

    ImagingLanguage model
    64Openness
  • Chan Zuckerberg InitiativeApril 29, 2025cell_type_annotationcross_speciesdisease_prediction+6

    Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.

    Single-cell
    67Openness
  • Shusi

    11
    Zhejiang UniversityApril 27, 2025cancerfoundation_modelgraph_neural_network+3

    Single-cell foundation model inferring context-specific protein-protein interactions from cancer transcriptomes via a variational graph autoencoder.

    Single-cellProtein
    20Openness
  • CodonFM

    8750
    NVIDIA +1 otherApril 25, 2025bertde_novo_designfoundation_model+7

    Codon-resolution language models trained on 130 million coding sequences from 20,000 species, learning codon rules for translation and mRNA stability.

    RNA
    72Openness
  • OmniEM

    4
    Peking UniversityApril 19, 2025electron_microscopyfoundation_modelsegmentation+2

    Unified electron microscopy image analysis toolkit built on EM-DINO, a vision foundation model pretrained on 5 million diverse EM images.

    Imaging
    4Openness
  • scPRINT

    15555
    Institut Pasteur +1 otherApril 16, 2025foundation_modelgene_network

    Single-cell foundation model pre-trained on 50 million cells that infers cell-specific gene regulatory networks from transformer attention matrices.

    Single-cell
    78Openness
  • ProGen3

    11454219
    ProfluentApril 16, 2025de_novo_designfoundation_modelgenerative+6

    Sparse mixture-of-experts autoregressive protein language model family pretrained on 1.5 trillion amino acid tokens with compute-optimal scaling.

    Protein
    33Openness
  • Swin-BOB

    504
    University of OxfordApril 9, 2025foundation_modelmrisegmentation+3

    3D MRI organ segmentation foundation model built on Swin-UNETR and trained on the UKBOB whole-body dataset covering 72 organs and skeletal structures.

    Imaging
    64Openness
  • Pinal

    942916
    Westlake UniversityApril 2, 2025foundation_modellanguage_modelprotein_design+1

    De novo protein design from natural language: a 16B-parameter framework turning text descriptions into sequences via structure-conditioned generation.

    Protein
    42Openness
  • HGFM

    37
    Tsinghua University +2 othersApril 1, 2025brain_connectivitydisease_classificationfew_shot+6

    Hypergraph foundation model for brain disease diagnosis from resting-state fMRI, self-supervised on high-order connectivity among brain regions.

    BiosignalsImaging
    10Openness
  • BioFM

    6
    M42March 27, 2025dnafoundation_modelgene_expression+5

    265M-parameter genomic foundation model whose BioToken scheme folds variants and region annotations into the tokens for variant effect prediction.

    DNA & Gene
    4Openness
  • TxGemma

    2566441
    Google DeepMind +1 otherMarch 25, 2025drug_discoveryfoundation_modelinstruction_tuning+2

    Open therapeutics foundation models from Google, built on Gemma-2, for drug-discovery property prediction and conversational reasoning.

    Language modelSmall molecule
    58Openness
  • Dyna-1

    801314
    Scripps ResearchMarch 19, 2025dynamics_predictionfoundation_modelnmr+2

    Protein dynamics model predicting per-residue probability of microsecond-millisecond conformational exchange from sequence or structure.

    Protein
    79Openness
  • seqLens

    7
    George Washington UniversityMarch 12, 2025bertfoundation_modelgenomics+7

    Genomic language models with disentangled attention, pretrained on prokaryotic and eukaryotic genomes for sequence classification and variant effects.

    DNA & Gene
    18Openness
  • BEPH

    7797
    Shanghai Jiao Tong UniversityMarch 10, 2025cancer_diagnosiscancer_subtypingfoundation_model+7

    Histopathology foundation model pretrained with BEiT masked image modeling on 11M+ tissue image tiles for cancer diagnosis and survival prediction.

    Pathology
    73Openness
  • TEDDY

    9
    Merck & Co.March 5, 2025cell_type_annotationdisease_classificationfoundation_model+3

    Single-cell RNA-seq foundation models combining masked modeling with ontology supervision to classify cell states across unseen donors and diseases.

    Single-cell
    46Openness
  • Hunan Normal University +1 otherFebruary 27, 2025cnnfoundation_modelsegmentation+3

    Universal ultrasound segmentation foundation model adapting the Segment Anything Model to eight anatomical regions in a single promptable network.

    Imaging
    14Openness
  • D-LMBmapX

    41
    MRC Laboratory of Molecular BiologyFebruary 25, 2025connectomicsfoundation_modelimage_registration+3

    Whole-brain axon and soma segmentation foundation model and registration pipeline for developmental connectomics, with no per-stage retraining.

    Imaging
    23Openness
  • Guangzhou Medical University +1 otherFebruary 23, 2025cell_type_annotationcross_attentiondna_methylation+5

    Single-cell DNA methylation foundation model capturing genome-wide CpG dependencies in whole-genome bisulfite sequencing across tissues and species.

    Single-cellDNA & Gene
    78Openness
  • SpatialEx

    38
    Jilin University +1 otherFebruary 23, 2025contrastive_learningfoundation_modelgene_expression_prediction+6

    Histology-anchored framework pairing an H&E foundation model with a cellular hypergraph to predict single-cell multi-omics from tissue images.

    Spatial omicsPathology
    57Openness
  • Evo 2

    4K2887.1K
    Arc InstituteFebruary 21, 2025dnafoundation_modelgenerative+2

    Genomic foundation model trained on 9.3 trillion DNA base pairs across all domains of life, with 40B parameters and a 1-million-token context.

    DNA & Gene
    92Openness
  • FetalCLIP

    7022
    Mohamed bin Zayed University of Artificial Intelligence +1 otherFebruary 20, 2025classificationcontrastive_learningfoundation_model+7

    Vision-language foundation model for fetal ultrasound, pretrained on 210,035 image-text pairs for plane classification, biometry, and segmentation.

    Imaging
    13Openness
  • LLaVA-Rad

    5874573
    Microsoft ResearchFebruary 20, 2025chest_x_rayfoundation_modelimage_text_retrieval+5

    Chest X-ray vision-language model that drafts the findings section of a radiology report, at 7B parameters small enough to run on a single GPU.

    ImagingLanguage model
    35Openness
  • HeartLang

    5646
    Peking UniversityFebruary 15, 2025arrhythmia_detectionecg_classificationelectrocardiogram+5

    ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.

    Biosignals
    78Openness