All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 289–312 of 552 filtered models
UniBiomed
7210119Hong Kong University of Science and Technology +2 othersApril 30, 2025foundation_modelhistologymultimodal+6Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.
ImagingLanguage model64OpennessTranscriptFormer
15736—Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.
Single-cell67OpennessShusi
11—Single-cell foundation model inferring context-specific protein-protein interactions from cancer transcriptomes via a variational graph autoencoder.
Single-cellProtein20OpennessOmniEM
—4—Unified electron microscopy image analysis toolkit built on EM-DINO, a vision foundation model pretrained on 5 million diverse EM images.
Imaging4OpennessscPRINT
15555—Single-cell foundation model pre-trained on 50 million cells that infers cell-specific gene regulatory networks from transformer attention matrices.
Single-cell78OpennessSwin-BOB
504—3D MRI organ segmentation foundation model built on Swin-UNETR and trained on the UKBOB whole-body dataset covering 72 organs and skeletal structures.
Imaging64OpennessPinal
942916De novo protein design from natural language: a 16B-parameter framework turning text descriptions into sequences via structure-conditioned generation.
Protein42OpennessHGFM
—37—Hypergraph foundation model for brain disease diagnosis from resting-state fMRI, self-supervised on high-order connectivity among brain regions.
BiosignalsImaging10OpennessTxGemma
2566441Open therapeutics foundation models from Google, built on Gemma-2, for drug-discovery property prediction and conversational reasoning.
Language modelSmall molecule58OpennessDyna-1
801314Protein dynamics model predicting per-residue probability of microsecond-millisecond conformational exchange from sequence or structure.
Protein79OpennessseqLens
7——Genomic language models with disentangled attention, pretrained on prokaryotic and eukaryotic genomes for sequence classification and variant effects.
DNA & Gene18OpennessBEPH
7797—Histopathology foundation model pretrained with BEiT masked image modeling on 11M+ tissue image tiles for cancer diagnosis and survival prediction.
Pathology73OpennessTEDDY
—9—Single-cell RNA-seq foundation models combining masked modeling with ontology supervision to classify cell states across unseen donors and diseases.
Single-cell46OpennessSAM-MedUS
27—Universal ultrasound segmentation foundation model adapting the Segment Anything Model to eight anatomical regions in a single promptable network.
Imaging14OpennessD-LMBmapX
41——MRC Laboratory of Molecular BiologyFebruary 25, 2025connectomicsfoundation_modelimage_registration+3Whole-brain axon and soma segmentation foundation model and registration pipeline for developmental connectomics, with no per-stage retraining.
Imaging23OpennessscDNAm-GPT
202—Guangzhou Medical University +1 otherFebruary 23, 2025cell_type_annotationcross_attentiondna_methylation+5Single-cell DNA methylation foundation model capturing genome-wide CpG dependencies in whole-genome bisulfite sequencing across tissues and species.
Single-cellDNA & Gene78OpennessSpatialEx
38——Jilin University +1 otherFebruary 23, 2025contrastive_learningfoundation_modelgene_expression_prediction+6Histology-anchored framework pairing an H&E foundation model with a cellular hypergraph to predict single-cell multi-omics from tissue images.
Spatial omicsPathology57OpennessEvo 2
4K2887.1KGenomic foundation model trained on 9.3 trillion DNA base pairs across all domains of life, with 40B parameters and a 1-million-token context.
DNA & Gene92OpennessFetalCLIP
7022—Mohamed bin Zayed University of Artificial Intelligence +1 otherFebruary 20, 2025classificationcontrastive_learningfoundation_model+7Vision-language foundation model for fetal ultrasound, pretrained on 210,035 image-text pairs for plane classification, biometry, and segmentation.
Imaging13OpennessLLaVA-Rad
5874573Chest X-ray vision-language model that drafts the findings section of a radiology report, at 7B parameters small enough to run on a single GPU.
ImagingLanguage model35OpennessHeartLang
5646—ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.
Biosignals78Openness