All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 241–264 of 316 filtered models
OPERA
8346—Respiratory acoustic foundation models pretrained on roughly 136K cough and breathing recordings for disease detection and lung function estimation.
Biosignals59OpennessBrainSegFounder
1575—3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.
Imaging51OpennessMULAN
251047Multimodal protein language model extending ESM-2 and SaProt with a Structure Adapter over residue torsion angles for protein function prediction.
Protein83OpennessLaBraM
646398—EEG foundation model that learns transferable brain-signal representations with a vector-quantized tokenizer and masked transformer pretraining.
Biosignals72OpennessProv-GigaPath
626944100.5KWhole-slide histopathology foundation model pretrained on 1.3 billion image tiles from 171,189 clinical slides spanning 31 tissue types.
Pathology58OpennessEyeFound
—43—The Hong Kong Polytechnic University +3 othersMay 18, 2024disease_diagnosisfoundation_modelmasked_autoencoder+7Ophthalmic imaging foundation model pretrained on 2.78M images across 11 modalities for diagnosis, prognosis, and visual question answering.
Imaging4OpennessCellSeg3D
1221—Self-supervised 3D cell segmentation for fluorescence microscopy, pairing WNet3D with Swin-UNetR to segment volumes without annotated training data.
Imaging89OpennessLOBSTER
1657—Efficient protein language model library from Prescient Design enabling high-quality sequence representations and fitness prediction in 24 GPU hours.
Protein69OpennessDistributional Graphormer
2.5K158—Deep learning framework predicting equilibrium distributions of molecular systems, enabling efficient ensemble generation and conformation sampling.
Protein46OpennessWalk-Jump Sampling
5758—Discrete generative model for antibody protein sequences combining MCMC walks on a smoothed energy landscape with one-step denoising jumps.
Protein60OpennessPuffin
10655—Interpretable model of human transcription initiation that decomposes promoter activity into a minimal set of sequence rules at base-pair resolution.
DNA & Gene23OpennessLaMIM
1922—West China Hospital of Sichuan University +1 otherApril 17, 2024autoencoderbrain_mrifoundation_model+6Brain MRI foundation model pretrained with masked image modeling on roughly 57,000 multi-contrast head scans for brain tumor diagnosis.
Imaging15OpennessUNI
7611.6K60KComputational pathology foundation model (ViT-L/16, DINOv2) pretrained on over 100 million H&E tiles from more than 100,000 whole-slide images.
Pathology46OpennessSSL-Wearables (HARNet)
162210—Self-supervised CNN pretrained on 700,000 person-days of UK Biobank accelerometer data for human activity recognition across devices and cohorts.
Biosignals28OpennessSelf-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.
Imaging92OpennessBrainMass
2557—Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.
Biosignals18OpennessVoCo
230113—Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.
Imaging69OpennessBrainWave (Brant-2)
4731—Foundation model spanning invasive SEEG/iEEG and non-invasive EEG in one backbone, with zero- and few-shot transfer across neurological disorders.
Biosignals10OpennessRudolfV
—74—Self-supervised pathology foundation model with a 300M-parameter vision transformer tile encoder, trained on a multi-stain whole-slide image corpus.
Pathology9Openness