All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 241264 of 316 filtered models

  • OPERA

    8346
    University of CambridgeJune 23, 2024autoencodercontrastive_learningcough+7

    Respiratory acoustic foundation models pretrained on roughly 136K cough and breathing recordings for disease detection and lung function estimation.

    Biosignals
    59Openness
  • University of Florida +1 otherJune 14, 2024foundation_modellesion_segmentationmri+7

    3D vision-transformer foundation model for multimodal neuroimage segmentation, pretrained self-supervised on brain MRI from 41,400 participants.

    Imaging
    51Openness
  • Hibou

    799138K
    HistAIJune 7, 2024foundation_modelhistologyself_supervised+1

    Histopathology foundation models pretrained with DINOv2 on over 1 million whole-slide images, released as Hibou-B and Hibou-L under Apache 2.0.

    Pathology
    46Openness
  • MULAN

    251047
    Skolkovo Institute of Science and TechnologyMay 30, 2024fine_tunedmultimodalproperty_prediction+4

    Multimodal protein language model extending ESM-2 and SaProt with a Structure Adapter over residue torsion angles for protein function prediction.

    Protein
    83Openness
  • LaBraM

    646398
    Shanghai Jiao Tong UniversityMay 29, 2024abnormal_detectionbrain_computer_interfaceeeg+6

    EEG foundation model that learns transferable brain-signal representations with a vector-quantized tokenizer and masked transformer pretraining.

    Biosignals
    72Openness
  • Prov-GigaPath

    626944100.5K
    Microsoft ResearchMay 22, 2024cancerfoundation_modelhistology+3

    Whole-slide histopathology foundation model pretrained on 1.3 billion image tiles from 171,189 clinical slides spanning 31 tissue types.

    Pathology
    58Openness
  • EyeFound

    43
    The Hong Kong Polytechnic University +3 othersMay 18, 2024disease_diagnosisfoundation_modelmasked_autoencoder+7

    Ophthalmic imaging foundation model pretrained on 2.78M images across 11 modalities for diagnosis, prognosis, and visual question answering.

    Imaging
    4Openness
  • CellSeg3D

    1221
    Mathis LabMay 17, 20243d_imagingmicroscopysegmentation+2

    Self-supervised 3D cell segmentation for fluorescence microscopy, pairing WNet3D with Swin-UNetR to segment volumes without annotated training data.

    Imaging
    89Openness
  • LOBSTER

    1657
    Prescient Design +1 otherMay 15, 2024fitness_predictionfoundation_modellanguage_model+5

    Efficient protein language model library from Prescient Design enabling high-quality sequence representations and fitness prediction in 24 GPU hours.

    Protein
    69Openness
  • Microsoft ResearchMay 13, 2024cryo_emdiffusiondrug_discovery+8

    Deep learning framework predicting equilibrium distributions of molecular systems, enabling efficient ensemble generation and conformation sampling.

    Protein
    46Openness
  • PLUTO

    32
    PathAIMay 13, 2024digital_pathologyfoundation_modelhistology+6

    Compact 22M-parameter ViT-S pathology foundation model pre-trained on 195M tiles, spanning subcellular segmentation to slide-level prediction.

    Pathology
    6Openness
  • Prescient Design +1 otherMay 7, 2024antibodyantibody_designde_novo_design+4

    Discrete generative model for antibody protein sequences combining MCMC walks on a smoothed energy landscape with one-step denoising jumps.

    Protein
    60Openness
  • Puffin

    10655
    UT Southwestern Medical CenterApril 26, 2024chromatincnngene_expression+3

    Interpretable model of human transcription initiation that decomposes promoter activity into a minimal set of sequence rules at base-pair resolution.

    DNA & Gene
    23Openness
  • LaMIM

    1922
    West China Hospital of Sichuan University +1 otherApril 17, 2024autoencoderbrain_mrifoundation_model+6

    Brain MRI foundation model pretrained with masked image modeling on roughly 57,000 multi-contrast head scans for brain tumor diagnosis.

    Imaging
    15Openness
  • SelfPAB

    1821
    NTNUMarch 25, 2024foundation_modelrepresentation_learningself_supervised+1

    Transformer encoder self-supervised on 100,000 hours of dual-accelerometer data, used as a frozen feature extractor for human activity recognition.

    Biosignals
    78Openness
  • UNI

    7611.6K60K
    Mahmood LabMarch 22, 2024dinofoundation_modelhistology+2

    Computational pathology foundation model (ViT-L/16, DINOv2) pretrained on over 100 million H&E tiles from more than 100,000 whole-slide images.

    Pathology
    46Openness
  • University of OxfordMarch 18, 2024cnnmulti_taskresnet+3

    Self-supervised CNN pretrained on 700,000 person-days of UK Biobank accelerometer data for human activity recognition across devices and cohorts.

    Biosignals
    28Openness
  • Harvard Medical School +6 othersMarch 15, 20243d_cnnbiomarker_discoverycontrastive_learning+9

    Self-supervised 3D CT foundation model that extracts general-purpose tumor representations for cancer imaging biomarker discovery and prognosis.

    Imaging
    92Openness
  • BrainMass

    2557
    Harbin Institute of Technology (Shenzhen) +1 otherMarch 3, 2024brain_networkdisease_diagnosisfmri+5

    Self-supervised foundation model for functional brain network analysis from resting-state fMRI, pretrained across 30 datasets for disorder diagnosis.

    Biosignals
    18Openness
  • VoCo

    230113
    Hong Kong University of Science and TechnologyFebruary 27, 2024contrastive_learningctfoundation_model+5

    Self-supervised pretraining framework for 3D medical image encoders that learns anatomy by predicting where a sub-volume sits within a CT scan.

    Imaging
    69Openness
  • Zhejiang UniversityFebruary 15, 2024disease_diagnosiseegfew_shot+6

    Foundation model spanning invasive SEEG/iEEG and non-invasive EEG in one backbone, with zero- and few-shot transfer across neurological disorders.

    Biosignals
    10Openness
  • EEGFormer

    64
    Microsoft +1 otherJanuary 11, 2024anomaly_detectioneegfoundation_model+5

    EEG foundation model pretrained with vector-quantized self-supervision, yielding interpretable discrete codes that transfer to seizure detection.

    Biosignals
    22Openness
  • RudolfV

    74
    Aignostics +7 othersJanuary 8, 2024biomarker_predictionfeature_extractionfoundation_model+3

    Self-supervised pathology foundation model with a 300M-parameter vision transformer tile encoder, trained on a multi-stain whole-slide image corpus.

    Pathology
    9Openness
  • IMPA

    2657
    Theis LabJanuary 8, 2024autoencodercell_biologydrug_discovery+5

    Generative image perturbation autoencoder predicting cellular morphological responses to chemical and genetic perturbations from control images.

    Single-cell
    53Openness