All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 7396 of 168 filtered models

  • MINIM

    158138
    Peking University +2 othersFebruary 1, 2025data_augmentationdiffusionfoundation_model+9

    Text-to-image diffusion model that generates synthetic medical images across imaging modalities and organs to augment scarce clinical training data.

    Imaging
    41Openness
  • EndoChat

    514423
    Chinese University of Hong Kong +5 othersJanuary 20, 2025endoscopygrounded_dialogueinstruction_tuning+6

    Grounded multimodal language model for endoscopic surgery, supporting visual dialogue, region-based question answering, and bounding-box grounding.

    ImagingLanguage model
    22Openness
  • MedicoSAM

    319
    Computational Cell AnalyticsJanuary 20, 2025foundation_modelinteractive_annotationmedical_imaging+4

    Segment Anything Model finetuned on diverse medical images, giving a reusable promptable checkpoint for interactive and automatic image segmentation.

    Imaging
    77Openness
  • Brainfound

    4
    Tsinghua University +2 othersJanuary 10, 2025contrastive_learningcross_modality_translationdiffusion+9

    Multimodal vision-text foundation model for brain CT and MRI, pretrained on roughly 10 million image-report pairs to act as a clinical copilot.

    ImagingLanguage model
    7Openness
  • CryoLens

    19
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etgenerative+6

    Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.

    Imaging
    74Openness
  • SABER

    18
    Chan Zuckerberg InitiativeJanuary 1, 2025cryo_etfoundation_modelsegmentation+3

    Cryo-ET segmentation framework adapting SAM2 to vesicles and membrane-bound compartments in tomograms and 2D micrographs, zero-shot or fine-tuned.

    Imaging
    78Openness
  • Octopi

    13
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.

    Imaging
    81Openness
  • MedPLIB

    1343910
    Baidu +3 othersDecember 12, 2024histologymedical_image_groundingmixture_of_experts+8

    Biomedical multimodal LLM that answers questions about medical images and returns pixel-level segmentation masks, using a mixture-of-experts design.

    ImagingLanguage model
    80Openness
  • BiMediX2

    742120
    Mohamed bin Zayed University of Artificial IntelligenceDecember 10, 2024histologyinstruction_tuninglanguage_model+7

    Bilingual Arabic-English medical multimodal model built on Llama 3.1 for radiology, CT, and histology image understanding and question answering.

    Language modelImagingPathology
    11Openness
  • SubCell

    612
    Chan Zuckerberg Initiative +2 othersDecember 8, 2024cell_biologyfluorescence_microscopyfoundation_model+3

    Vision transformers trained on Human Protein Atlas fluorescence microscopy for subcellular protein localization and cell morphology representation.

    Imaging
    84Openness
  • BME-X

    6876
    University of North Carolina at Chapel HillDecember 5, 2024cnndenoisingfoundation_model+5

    Tissue-aware foundation model that restores brain MRI quality across motion correction, super-resolution, denoising, and harmonization.

    Imaging
    70Openness
  • BrainIAC

    13924
    Mass General Brigham +4 othersDecember 2, 2024brain_age_predictionbrain_mricontrastive_learning+7

    Self-supervised vision foundation model for structural brain MRI, providing a reusable encoder for brain age, survival, and image classification.

    Imaging
    24Openness
  • UltraSam

    13633
    University of StrasbourgNovember 25, 2024foundation_modelimage_classificationsegmentation+3

    Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.

    Imaging
    26Openness
  • BiomedParse

    686170548
    Microsoft ResearchNovember 18, 2024foundation_modelmedical_imagingmultimodal+4

    Biomedical imaging foundation model that segments, detects, and recognizes structures across nine modalities from natural language prompts.

    Imaging
    60Openness
  • Recursion PharmaceuticalsNovember 12, 2024cell_paintingdrug_discoveryfoundation_model+4

    Cell Painting microscopy foundation model, a channel-agnostic masked autoencoder producing morphological embeddings for zero-shot phenotypic analysis.

    Imaging
    26Openness
  • Cryo-IEF

    73
    Westlake UniversityNovember 6, 2024contrastive_learningcryo_emfoundation_model+3

    Cryo-EM foundation model pre-trained on 65 million particle images, enabling zero-shot classification, pose clustering, and quality assessment.

    Imaging
    42Openness
  • Van Valen LabNovember 3, 2024cell_phenotypingfoundation_modelspatial_proteomics+2

    Cell phenotyping model for spatial proteomics using a language-informed vision transformer to classify cell types zero-shot across marker panels.

    ImagingSpatial omics
    33Openness
  • German Cancer Research Center (DKFZ) +5 othersOctober 30, 2024brain_mricnnfoundation_model+7

    Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.

    Imaging
    45Openness
  • SS-CXR

    13
    Children's National Hospital +2 othersOctober 27, 2024disease_classificationfoundation_modelradiology+3

    Self-supervised vision transformer pretrained on chest X-rays to produce a domain-specific foundation model for classification and lung segmentation.

    Imaging
    22Openness
  • PULSE

    67301.9K
    The Ohio State University +1 otherOctober 21, 2024cardiologyecgecg_interpretation+6

    Multimodal large language model that interprets 12-lead electrocardiogram images, answering open-ended clinical questions and generating ECG reports.

    BiosignalsImaging
    84Openness
  • CELL-Diff

    7
    Chan Zuckerberg InitiativeOctober 18, 2024cell_biologyde_novo_designdiffusion+7

    Diffusion model translating in both directions between protein sequences and fluorescence microscopy images to predict subcellular localization.

    Imaging
    87Openness
  • DynaCLR

    1023
    Chan Zuckerberg InitiativeOctober 15, 2024cell_biologycell_state_classificationcnn+5

    Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.

    Imaging
    71Openness
  • gCIS

    109
    United Imaging Intelligence +1 otherOctober 14, 2024ct_imagingfoundation_modellesion_detection+4

    CT segmentation foundation model that uses task prompts to segment 83 anatomical structures and lesions across whole-body scans in a single network.

    Imaging
    14Openness
  • CryoFM

    35722
    ByteDance SeedOctober 11, 2024cryo_emdensity_mapsflow_matching+3

    Generative foundation model for cryo-EM density maps using flow matching, enabling zero-shot denoising, map sharpening, and missing wedge restoration.

    Imaging
    77Openness