All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 124 of 24 filtered models

  • PlantGeneAnn

    12126
    Huazhong Agricultural UniversityJune 25, 2026dnafoundation_modelgene_structure_annotation+7

    Plant genome foundation model for ab initio gene structure annotation, predicting genes, coding sequences, and exons at single-nucleotide resolution.

    DNA & Gene
    66Openness
  • CellOS

    Vitaura +2 othersJune 23, 2026batch_integrationcell_type_annotationfoundation_model+6

    Multi-view single-cell foundation model at 12B parameters, aligning expression and perception views with an LLM-JEPA joint-embedding objective.

    Single-cell
    8Openness
  • MoE-Bind

    2
    University of North BengalJune 13, 2026autoregressivede_novo_designgenerative+6

    Protein binder generator producing receptor-conditioned binders from sequence alone, using a sparse Mixture-of-Experts transformer with no 3D input.

    Protein
    54Openness
  • Genos-m

    26123
    BGI-HangzhouAIMay 21, 2026foundation_modelgene_fitness_predictionmetagenomics+7

    Mixture-of-Experts genomic foundation model for the human microbiome, with 4.7B parameters pretrained on bacterial, archaeal, and phage genomes.

    DNA & Gene
    73Openness
  • OmniGene-4

    1
    Huazhong University of Science and TechnologyMay 12, 2026dnafoundation_modelinstruction_following+7

    Unified bio-language Mixture-of-Experts model spanning DNA, protein sequence and structure, and biological text across eight task families.

    Language modelDNA & GeneProtein
    7Openness
  • Zhejiang Lab +1 otherApril 21, 2026chromatinchromatin_accessibilitydna+8

    Genomic foundation model for rice, pretrained on 422 Oryza genomes with a 1 Mbp context window and a 1.25B-parameter mixture-of-experts transformer.

    DNA & Gene
    90Openness
  • Golab (SAIS Physics Lab)March 23, 2026diffusiondrug_discoveryfoundation_model+4

    Molecular foundation models pretrained on density functional theory data, encoding 3D geometry and quantum behavior for ADMET and drug discovery.

    Small molecule
    46Openness
  • Sun Yat-sen UniversityMarch 13, 2026drug_repurposingfoundation_modelgenerative+6

    Generative virtual-cell model predicting whole-transcriptome responses to unseen compounds and genetic perturbations, from cell lines to organoids.

    Single-cellSmall molecule
    29Openness
  • MoLF

    National Center for Tumor Diseases DresdenFebruary 2, 2026flow_matchinggene_expressiongenerative+5

    Pan-cancer model predicting spatial gene expression from H&E histology using conditional flow matching with a mixture-of-experts velocity field.

    PathologySpatial omics
    9Openness
  • Gengram

    51
    Zhejiang LabJanuary 29, 2026dnafoundation_modelgenomics+5

    Retrieval-augmented genomic foundation model that gives transformer backbones a hash-based k-mer motif memory for functional genomics tasks.

    DNA & Gene
    83Openness
  • GenoME

    1
    Changping Laboratory +1 otherDecember 28, 2025chromatinepigenomicsfoundation_model+8

    Mixture-of-Experts generative model turning DNA sequence plus cell-type ATAC-seq into unified epigenomic, transcriptomic, and 3D chromatin profiles.

    DNA & GeneSingle-cell
    8Openness
  • vir2vec

    31388
    University of FloridaDecember 12, 2025embeddingsfoundation_modelgenomics+6

    Pan-viral genomic language model producing fixed genome-level embeddings of viral DNA and RNA, reused across classification tasks without retraining.

    DNA & Gene
    53Openness
  • Huazhong University of Science and TechnologyDecember 8, 2025dnafoundation_modelgene_expression+6

    Plant genome foundation model pairing a bidirectional Mamba backbone with sparse Mixture-of-Experts, pretrained on 25.4B nucleotides from 42 species.

    DNA & Gene
    53Openness
  • NeurIPT

    1111
    Xiamen University Malaysia +4 othersOctober 18, 2025brain_computer_interfaceseegeeg_decoding+8

    EEG foundation model for brain-computer interfaces, pairing masked pretraining with a mixture-of-experts transformer across electrode montages.

    Biosignals
    11Openness
  • University of PennsylvaniaOctober 1, 2025batch_integrationcell_type_annotationfoundation_model+5

    Kidney-specialized single-cell foundation model trained across four mammalian species for zero-shot cell-type annotation and batch integration.

    Single-cellSpatial omics
    22Openness
  • Shanghai Jiao Tong UniversityOctober 1, 2025brain_age_predictionbrain_mridensenet+8

    Brain MRI foundation model pairing DenseNet and Vision Transformer backbones with mixture of experts for disease diagnosis and brain age prediction.

    Imaging
    8Openness
  • Microsoft ResearchJuly 21, 2025language_modelmixture_of_expertsprotein_design+2

    Protein language models trained on billions of natural and synthetic sequences for de novo design and zero-shot mutation-effect prediction.

    Protein
    96Openness
  • ProGen3

    11454217
    ProfluentApril 16, 2025de_novo_designfoundation_modelgenerative+6

    Sparse mixture-of-experts autoregressive protein language model family pretrained on 1.5 trillion amino acid tokens with compute-optimal scaling.

    Protein
    33Openness
  • MedPLIB

    1343910
    Baidu +3 othersDecember 12, 2024histologymedical_image_groundingmixture_of_experts+8

    Biomedical multimodal LLM that answers questions about medical images and returns pixel-level segmentation masks, using a mixture-of-experts design.

    ImagingLanguage model
    80Openness
  • genbio.aiNovember 29, 2024foundation_modellanguage_modelmixture_of_experts+6

    Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.

    Protein
    29Openness
  • PaPaGei

    17481
    Nokia Bell LabsOctober 27, 2024bias_evaluationcardiovascular_healthcnn+5

    Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.

    Biosignals
    67Openness
  • MoME

    3125
    Beijing Institute of Technology +3 othersMay 16, 2024brain_mricnncurriculum_learning+7

    Universal brain lesion segmentation for multi-modal brain MRI, using a Mixture of Modality Experts to span diverse modalities and lesion types.

    Imaging
    79Openness
  • M4oE

    5542
    Hong Kong Baptist University +1 otherMay 15, 2024foundation_modelmedical_imagingmixture_of_experts+3

    Mixture-of-Experts foundation model for medical image segmentation that generalizes across imaging modalities and clinical centers.

    Imaging
    28Openness
  • Med-MoE

    15889
    Zhejiang University +2 othersApril 16, 2024histologyimage_classificationinstruction_tuning+5

    Lightweight mixture-of-experts medical vision-language model routing visual question answering and image classification to domain-specific experts.

    ImagingLanguage modelPathology
    81Openness