All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–24 of 24 filtered models
PlantGeneAnn
12—126Plant genome foundation model for ab initio gene structure annotation, predicting genes, coding sequences, and exons at single-nucleotide resolution.
DNA & Gene66OpennessMoE-Bind
2——Protein binder generator producing receptor-conditioned binders from sequence alone, using a sparse Mixture-of-Experts transformer with no 3D input.
Protein54OpennessGenos-m
26—123Mixture-of-Experts genomic foundation model for the human microbiome, with 4.7B parameters pretrained on bacterial, archaeal, and phage genomes.
DNA & Gene73OpennessOmniGene-4
—1—Unified bio-language Mixture-of-Experts model spanning DNA, protein sequence and structure, and biological text across eight task families.
Language modelDNA & GeneProtein7OpennessOneGenome-Rice
25—15Genomic foundation model for rice, pretrained on 422 Oryza genomes with a 1 Mbp context window and a 1.25B-parameter mixture-of-experts transformer.
DNA & Gene90OpennessSuiren-1.0
171—Molecular foundation models pretrained on density functional theory data, encoding 3D geometry and quantum behavior for ADMET and drug discovery.
Small molecule46OpennessAetherCell
202—Generative virtual-cell model predicting whole-transcriptome responses to unseen compounds and genetic perturbations, from cell lines to organoids.
Single-cellSmall molecule29OpennessMoLF
———Pan-cancer model predicting spatial gene expression from H&E histology using conditional flow matching with a mixture-of-experts velocity field.
PathologySpatial omics9OpennessGengram
51——Retrieval-augmented genomic foundation model that gives transformer backbones a hash-based k-mer motif memory for functional genomics tasks.
DNA & Gene83OpennessGenoME
—1—Mixture-of-Experts generative model turning DNA sequence plus cell-type ATAC-seq into unified epigenomic, transcriptomic, and 3D chromatin profiles.
DNA & GeneSingle-cell8Opennessvir2vec
31388Pan-viral genomic language model producing fixed genome-level embeddings of viral DNA and RNA, reused across classification tasks without retraining.
DNA & Gene53OpennessPlantBiMoE
8—6Plant genome foundation model pairing a bidirectional Mamba backbone with sparse Mixture-of-Experts, pretrained on 25.4B nucleotides from 42 species.
DNA & Gene53OpennessNeurIPT
1111—EEG foundation model for brain-computer interfaces, pairing masked pretraining with a mixture-of-experts transformer across electrode montages.
Biosignals11OpennessKidney-specialized single-cell foundation model trained across four mammalian species for zero-shot cell-type annotation and batch integration.
Single-cellSpatial omics22OpennessDenseFormer-MoE
—27—Brain MRI foundation model pairing DenseNet and Vision Transformer backbones with mixture of experts for disease diagnosis and brain age prediction.
Imaging8OpennessDayhoff Atlas
9911—Protein language models trained on billions of natural and synthetic sequences for de novo design and zero-shot mutation-effect prediction.
Protein96OpennessAIDO.Protein
1682290Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.
Protein29OpennessPaPaGei
17481—Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.
Biosignals67OpennessMoME
3125—Universal brain lesion segmentation for multi-modal brain MRI, using a Mixture of Modality Experts to span diverse modalities and lesion types.
Imaging79OpennessM4oE
5542—Hong Kong Baptist University +1 otherMay 15, 2024foundation_modelmedical_imagingmixture_of_experts+3Mixture-of-Experts foundation model for medical image segmentation that generalizes across imaging modalities and clinical centers.
Imaging28OpennessMed-MoE
15889—Lightweight mixture-of-experts medical vision-language model routing visual question answering and image classification to domain-specific experts.
ImagingLanguage modelPathology81Openness