All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 115 of 15 filtered models

  • HiFi-ST

    Nanjing Drum Tower HospitalJuly 2, 2026gene_expression_predictionhistologyneural_field+1

    Spatial transcriptomics prediction from histology using conditional neural fields to reconstruct continuous gene expression fields.

    PathologySpatial omics
    21Openness
  • Nanjing University +2 othersMay 30, 2026foundation_modelgene_expression_predictionhistology+5

    Tri-modal foundation model unifying histology images, spatial transcriptomics, and language for zero-shot pathology and spatial biology reasoning.

    PathologySpatial omics
    65Openness
  • BRIDGE

    The University of Hong KongMay 8, 2026contrastive_learningfoundation_modelgene_expression_prediction+8

    Multi-organ foundation model aligning histology images with spatial-transcriptomics profiles for zero-shot expression and survival prediction.

    PathologySpatial omics
    31Openness
  • Phoenix

    Helmholtz Munich +1 otherApril 29, 2026cell_type_annotationflow_matchingfoundation_model+6

    Virtual spatial transcriptomics foundation model predicting pan-cancer, spatially-resolved single-cell gene expression from H&E histology slides.

    PathologySpatial omics
    8Openness
  • STORM

    3
    Stanford UniversityApril 4, 2026clinical_outcome_predictionfoundation_modelgene_expression_prediction+6

    Spatial transcriptomics foundation model pairing gene expression with H&E histology for spatial domain discovery and clinical outcome prediction.

    Spatial omicsPathology
    17Openness
  • MIT +1 otherMarch 11, 2026cell_type_annotationfoundation_modelgene_expression_prediction+7

    Cell-centric microscopy foundation model that distills morphology and microenvironment views into a unified embedding for virtual spatial omics.

    Spatial omicsImagingPathology
    15Openness
  • SEAL

    484
    Mahmood Lab +2 othersFebruary 15, 2026cancer_subtypingfoundation_modelgene_expression_prediction+5

    Vision-omics finetuning that aligns pathology foundation models with spatial transcriptomics so morphology features predict local gene expression.

    PathologySpatial omics
    32Openness
  • M-Optimus

    BioptimusDecember 17, 2025clinical_outcome_predictiondrug_target_identificationfoundation_model+8

    Multimodal foundation model that embeds histology, transcriptomics, and clinical records in one space for patient stratification and target discovery.

    PathologySpatial omicsSingle-cell
    3Openness
  • MIMYR

    2
    Carnegie Mellon UniversityNovember 24, 2025cell_biologycell_type_annotationdata_imputation+6

    Generative framework that reconstructs missing spatial transcriptomics regions by jointly predicting cell locations, cell types, and gene expression.

    Spatial omicsSingle-cell
    16Openness
  • SIGMMA

    1
    Helmholtz Munich +1 otherNovember 19, 2025contrastive_learningcross_modal_retrievalgene_expression_prediction+7

    Multi-modal contrastive model that aligns H&E histopathology with spatial transcriptomics across tissue scales to predict gene expression from images.

    PathologySpatial omics
    20Openness
  • ETH ZurichSeptember 23, 2025cancerdeep_setsgene_expression_prediction+4

    Predicts virtual single-cell spatial transcriptomics from H&E histology using frozen pathology foundation models and spot-level supervision.

    PathologySpatial omics
    58Openness
  • Central South UniversityAugust 11, 2025foundation_modelgene_expression_predictionhistology+6

    Histology vision transformer with 80M parameters that predicts spatial gene expression from H&E tissue images and transfers to tumor detection.

    PathologySpatial omics
    59Openness
  • SpatialEx

    38
    Jilin University +1 otherFebruary 23, 2025contrastive_learningfoundation_modelgene_expression_prediction+6

    Histology-anchored framework pairing an H&E foundation model with a cellular hypergraph to predict single-cell multi-omics from tissue images.

    Spatial omicsPathology
    57Openness
  • AIDO.DNA

    1681783
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    DNA foundation model scaling an encoder-only transformer to 7 billion parameters for variant effect prediction, gene expression, and sequence design.

    DNA & Gene
    27Openness
  • University of TokyoJuly 25, 2024bertchromatinchromatin_state_modeling+7

    Chromatin-state language model pretrained on ROADMAP annotations from 127 human cell types to find chromatin-state motifs and predict gene expression.

    DNA & Gene
    86Openness