All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 19 of 9 filtered models

  • Nanjing University +2 othersMay 30, 2026foundation_modelgene_expression_predictionhistology+7

    A tri-modal foundation model unifying histology images, spatial transcriptomics, and biological language for zero-shot spatial biology and pathology reasoning.

    PathologySpatial omics
    65Openness
  • BRIDGE

    The University of Hong KongMay 8, 2026contrastive_learningfoundation_modelgene_expression_prediction+8

    A multi-organ foundation model aligning histology image features with spatial-transcriptomics gene expression across 13 organs for zero-shot virtual ST and survival prediction.

    PathologySpatial omics
    31Openness
  • Phoenix

    Helmholtz Munich +1 otherApril 29, 2026cell_type_annotationflow_matchingfoundation_model+6

    Latent flow-matching foundation model that predicts pan-cancer spatially-resolved single-cell gene expression directly from routine H&E histology slides.

    PathologySpatial omics
    8Openness
  • STORM

    1
    Stanford UniversityApril 4, 2026clinical_outcome_predictionfoundation_modelgene_expression_prediction+7

    A hierarchical multimodal foundation model integrating spatial transcriptomics and H&E histology for biological discovery and platform-agnostic clinical prediction.

    Spatial omicsPathology
    17Openness
  • MIT +1 otherMarch 11, 2026cell_type_annotationfoundation_modelgene_expression_prediction+7

    A self-supervised, cell-centric pretraining strategy that distills morphology and microenvironment views of each cell into a unified embedding for virtual spatial omics from microscopy.

    Spatial omicsImagingPathology
    15Openness
  • M-Optimus

    BioptimusDecember 17, 2025clinical_outcome_predictiondrug_target_identificationfoundation_model+8

    Bioptimus's first multimodal, multi-scale World Model for biology, integrating histology, transcriptomics, and clinical data from millions of patients into a unified embedding space.

    PathologySpatial omicsSingle-cell
    3Openness
  • SpaFoundation

    Central South UniversityAugust 11, 2025foundation_modelgene_expression_predictionhistology+6

    An 80M-parameter histology Vision Transformer foundation model that predicts spatial gene expression from H&E tissue images and transfers to tumor detection and spatial clustering.

    PathologySpatial omics
    59Openness
  • AIDO.DNA

    16315113
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    A 7-billion-parameter encoder-only DNA foundation model trained on 10.6 billion nucleotides from 796 species for functional genomics and synthetic biology.

    DNA & Gene
    27Openness
  • University of TokyoJuly 25, 2024bertchromatinchromatin_state_modeling+7

    BERT-based model pretrained on 15-state ROADMAP chromatin annotations across 127 human cell types to uncover chromatin-state motifs and predict gene expression.

    DNA & Gene
    86Openness