All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 193–216 of 316 filtered models
TEDDY
—9—Single-cell RNA-seq foundation models combining masked modeling with ontology supervision to classify cell states across unseen donors and diseases.
Single-cell46OpennessHeartLang
5646—ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.
Biosignals78OpennessFunctional MRI foundation model that learns brain dynamics as a stochastic optimal control problem, self-supervised on 41,072 UK Biobank subjects.
Biosignals8OpennessGenomeOcean
150241K4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.
DNA & Gene49OpennessFM-CT
6213—Self-supervised 3D vision foundation model for non-contrast head CT, pretrained on 361,663 scans to detect a broad range of intracranial disease.
Imaging26OpennessPulse-PPG
7345—Photoplethysmography foundation model pretrained on raw wearable signals from a field study, transferring across lab and field health tasks.
Biosignals64OpennessSNPBag
15——Genomics foundation model for genome-scale SNP analysis, handling imputation, phasing, ancestry, and relatedness from one 0.8B-parameter checkpoint.
DNA & Gene29OpennessMUSK
240283—Vision-language foundation model for precision oncology, pretrained on 50M pathology images and 1B text tokens via unified masked modeling.
PathologyLanguage model12OpennessCryoLens
19——Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.
Imaging74OpennessOctopi
13——Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.
Imaging81OpennessWearable accelerometry foundation model distilled from a PPG encoder, predicting cardiovascular and health biomarkers from motion signals alone.
Biosignals5OpennessNormWear
5931116University of California, San DiegoDecember 12, 2024disease_risk_predictionfoundation_modelmultimodal+5Multimodal foundation model for wearable physiological sensing across PPG, ECG, EEG, GSR, and IMU signals, using channel-aware attention.
Biosignals77OpennessCBraMod
329185—EEG foundation model for brain-computer interface decoding, factorizing self-attention into parallel spatial and temporal branches.
Biosignals78OpennessSubCell
612—Chan Zuckerberg Initiative +2 othersDecember 8, 2024cell_biologyfluorescence_microscopyfoundation_model+3Vision transformers trained on Human Protein Atlas fluorescence microscopy for subcellular protein localization and cell morphology representation.
Imaging84OpennessPLAID
12714—Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.
Protein77OpennessBrainIAC
13924—Self-supervised vision foundation model for structural brain MRI, providing a reusable encoder for brain age, survival, and image classification.
Imaging24OpennessAIDO.Protein
1682290Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.
Protein29OpennessTITAN
357218118.2KSlide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.
Pathology21OpennessAnyECG
45—Zhejiang University +3 othersNovember 17, 2024anomaly_detectionarrhythmia_classificationelectrocardiogram+6ECG foundation model that learns discrete rhythm tokens from noisy real-world recordings for arrhythmia classification and anomaly detection.
Biosignals10OpennessOpenPhenom-S/16
78888.9KCell Painting microscopy foundation model, a channel-agnostic masked autoencoder producing morphological embeddings for zero-shot phenotypic analysis.
Imaging26Openness