All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 193216 of 316 filtered models

  • TEDDY

    9
    Merck & Co.March 5, 2025cell_type_annotationdisease_classificationfoundation_model+3

    Single-cell RNA-seq foundation models combining masked modeling with ontology supervision to classify cell states across unseen donors and diseases.

    Single-cell
    46Openness
  • HeartLang

    5646
    Peking UniversityFebruary 15, 2025arrhythmia_detectionecg_classificationelectrocardiogram+5

    ECG foundation model that treats heartbeats as words and rhythm strips as sentences, using heartbeat-level tokenization for diagnostic classification.

    Biosignals
    78Openness
  • KAIST +1 otherFebruary 7, 2025disease_diagnosisfmrifoundation_model+6

    Functional MRI foundation model that learns brain dynamics as a stochastic optimal control problem, self-supervised on 41,072 UK Biobank subjects.

    Biosignals
    8Openness
  • DOE Joint Genome Institute +6 othersFebruary 5, 2025de_novo_designfoundation_modelgenerative+6

    4B-parameter generative genome foundation model trained on assembled environmental metagenomes for microbial representation and de novo DNA design.

    DNA & Gene
    49Openness
  • FM-CT

    6213
    NYU Grossman School of MedicineFebruary 4, 2025disease_detectionfoundation_modelhead_ct+4

    Self-supervised 3D vision foundation model for non-contrast head CT, pretrained on 361,663 scans to detect a broad range of intracranial disease.

    Imaging
    26Openness
  • Pulse-PPG

    7345
    University of Memphis +1 otherFebruary 3, 2025cnncontrastive_learningfoundation_model+5

    Photoplethysmography foundation model pretrained on raw wearable signals from a field study, transferring across lab and field health tasks.

    Biosignals
    64Openness
  • SNPBag

    15
    Zhejiang LabJanuary 29, 2025embeddingsfoundation_modelgenomics+3

    Genomics foundation model for genome-scale SNP analysis, handling imputation, phasing, ancestry, and relatedness from one 0.8B-parameter checkpoint.

    DNA & Gene
    29Openness
  • MUSK

    240283
    Stanford University +1 otherJanuary 8, 2025cross_modal_retrievalfoundation_modelhistology+9

    Vision-language foundation model for precision oncology, pretrained on 50M pathology images and 1B text tokens via unified masked modeling.

    PathologyLanguage model
    12Openness
  • CryoLens

    19
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etgenerative+6

    Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.

    Imaging
    74Openness
  • Octopi

    13
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etparticle_picking+3

    Cryo-ET particle picking model that localizes and classifies multiple protein complexes in a tomogram with a single 3D U-Net forward pass.

    Imaging
    81Openness
  • AppleDecember 15, 2024activity_recognitionbiomarker_predictioncardiovascular_health+6

    Wearable accelerometry foundation model distilled from a PPG encoder, predicting cardiovascular and health biomarkers from motion signals alone.

    Biosignals
    5Openness
  • NormWear

    5931116
    University of California, San DiegoDecember 12, 2024disease_risk_predictionfoundation_modelmultimodal+5

    Multimodal foundation model for wearable physiological sensing across PPG, ECG, EEG, GSR, and IMU signals, using channel-aware attention.

    Biosignals
    77Openness
  • CBraMod

    329185
    Zhejiang UniversityDecember 10, 2024brain_computer_interfaceeegeeg_decoding+4

    EEG foundation model for brain-computer interface decoding, factorizing self-attention into parallel spatial and temporal branches.

    Biosignals
    78Openness
  • SubCell

    612
    Chan Zuckerberg Initiative +2 othersDecember 8, 2024cell_biologyfluorescence_microscopyfoundation_model+3

    Vision transformers trained on Human Protein Atlas fluorescence microscopy for subcellular protein localization and cell morphology representation.

    Imaging
    84Openness
  • PLAID

    12714
    UC Berkeley +1 otherDecember 2, 2024de_novo_designdiffusiongenerative+4

    Latent diffusion model for controllable all-atom protein generation that co-designs sequence and structure while training on sequences alone.

    Protein
    77Openness
  • BrainIAC

    13924
    Mass General Brigham +4 othersDecember 2, 2024brain_age_predictionbrain_mricontrastive_learning+7

    Self-supervised vision foundation model for structural brain MRI, providing a reusable encoder for brain age, survival, and image classification.

    Imaging
    24Openness
  • AIDO.DNA

    1681783
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    DNA foundation model scaling an encoder-only transformer to 7 billion parameters for variant effect prediction, gene expression, and sequence design.

    DNA & Gene
    27Openness
  • genbio.aiNovember 29, 2024foundation_modellanguage_modelmixture_of_experts+6

    Mixture-of-experts protein language model scaling to 16 billion parameters, applied to variant effect prediction and de novo protein design.

    Protein
    29Openness
  • TITAN

    357218118.2K
    Mahmood Lab +3 othersNovember 29, 2024cross_modal_retrievalfoundation_modelhistology+4

    Slide-level pathology foundation model turning whole-slide images into reusable embeddings for classification, retrieval, and report generation.

    Pathology
    21Openness
  • AIDO.Cell

    16817108
    genbio.aiNovember 28, 2024bertcell_biologycell_type_annotation+7

    Single-cell RNA-seq foundation model pretrained on 50 million human cells, encoding the full transcriptome for annotation and perturbation modeling.

    Single-cell
    29Openness
  • AIDO.RNA

    168261.1K
    genbio.aiNovember 28, 2024bertfoundation_modellanguage_model+7

    RNA foundation model with 1.6 billion parameters, pretrained on 42 million non-coding RNA sequences for structure prediction and RNA sequence design.

    RNA
    18Openness
  • RelCon

    3430
    Apple +2 othersNovember 27, 2024activity_recognitioncnncontrastive_learning+4

    Motion foundation model for wearable accelerometry, trained with relative contrastive learning on 1B segments from 87,376 participants.

    Biosignals
    48Openness
  • AnyECG

    45
    Zhejiang University +3 othersNovember 17, 2024anomaly_detectionarrhythmia_classificationelectrocardiogram+6

    ECG foundation model that learns discrete rhythm tokens from noisy real-world recordings for arrhythmia classification and anomaly detection.

    Biosignals
    10Openness
  • Recursion PharmaceuticalsNovember 12, 2024cell_paintingdrug_discoveryfoundation_model+4

    Cell Painting microscopy foundation model, a channel-agnostic masked autoencoder producing morphological embeddings for zero-shot phenotypic analysis.

    Imaging
    26Openness