Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1657–1680 of 2336 models
Spatial transcriptomics foundation model aligning histology with gene expression at spot and neighborhood scale for zero-shot tissue domain calling.
Renal pathology segmentation model resolving 14 glomerular tissue, cell, and lesion classes in human and mouse whole-slide images.
RNA-binding protein binding profiles predicted base by base across 800 bp windows, with an m6A signal channel that exposes methylation-RBP crosstalk.
Multi-scale latent diffusion model for histopathology that synthesizes tissue patches at any magnification and composes them into 4096-pixel images.
Radiology CT framework pairing lesion-driven contrastive slice embeddings with attention pooling to predict clinical endpoints without fine-tuning.
Ultrasound foundation model pretrained by federated learning across 16 institutions, transferring to disease diagnosis and lesion segmentation.
Histopathology image synthesis steered by a hand-drawn coarse tissue mask, refined into a fine-grained semantic mask before H&E or IHC rendering.
Promptable ultrasound image segmentation foundation model, a SAM adaptation trained on US-43d, the largest public ultrasound segmentation corpus.
Vector-based virtual screening model that co-embeds proteins and small molecules so a drug-target interaction reduces to a single dot product.
Virtual staining diffusion model that converts kidney histology between H&E, Masson's trichrome, PAS, and PASM in any direction from one checkpoint.
Prostate histopathology classifiers that split H&E tissue into benign, Gleason 3, 4 and 5 patches and aggregate those calls into an ISUP grade group.
Enhancer-promoter interaction prediction from DNA sequence and ATAC-seq alone. Spearman above 0.90 on cell types unseen during training.
Conditional denoising diffusion model that synthesizes chest radiographs from patient demographics and echocardiographic ventricular measurements.
Lung cancer histopathology model that predicts spread through air spaces from whole-slide images using a feature-interactive Siamese graph encoder.
Histopathology foundation model aligned to spatial transcriptomics by a cross-modal ranking loss, embedding H&E patches without gene input.
De novo peptide design across non-canonical amino acid space, using guided diffusion over receptor-ligand interfaces to reach D-amino acid chemistry.
Peptide identification for diaPASEF proteomics, scoring fragment coelution across retention time and ion mobility with a pretrained CNN.
Protein-protein interaction prediction from structure alone, embedding each protein once so a proteome-wide dot product replaces pairwise queries.
Hydration-site prediction placing water molecules on protein surfaces by score-based diffusion, within 0.3 Å of crystallographic positions.
Slide-level histopathology encoder that contrastively aligns tile embeddings from several patch foundation models through a Mamba-2 aggregator.
Target-conditioned generative language model that designs drug-like SMILES from a protein sequence, tuned on regulator-approved drug-target pairs.
Single-cell foundation model trained by metric learning to embed scRNA-seq profiles for cell type annotation and similarity search in cell atlases.