All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 4972 of 86 filtered models

  • Broad InstituteAugust 17, 2025chromatinfoundation_modelgene_regulation+7

    Multimodal foundation model predicting genome-wide binding of chromatin-associated proteins from protein sequence, DNA sequence, and chromatin state.

    DNA & GeneProtein
    25Openness
  • AlphaGenome

    2K154
    Google DeepMindJune 27, 2025chromatinfoundation_modelgene_expression+4

    DNA foundation model that predicts thousands of functional genomic tracks, from expression and splicing to chromatin, at single base-pair resolution.

    DNA & Gene
    49Openness
  • University of Oregon +1 otherJune 24, 2025ancestral_recombination_graph_inferencecoalescence_time_estimationgenomics+4

    Decoder-only transformer that recasts ancestral recombination graph inference as next-token prediction, estimating coalescence times from variation.

    DNA & Gene
    83Openness
  • LucaVirus

    745155
    Sun Yat-sen University +1 otherJune 14, 2025antibody_designfoundation_modelgenomics+8

    Multimodal viral foundation model over nucleotide and protein sequence, built for virus discovery, function annotation, and antibody design.

    DNA & GeneProtein
    88Openness
  • IBM ResearchJune 1, 2025cell_type_annotationfoundation_modelgene_expression+6

    Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.

    DNA & Gene
    84Openness
  • CodonFM

    8747
    NVIDIA +1 otherApril 25, 2025bertde_novo_designfoundation_model+7

    Codon-resolution language models trained on 130 million coding sequences from 20,000 species, learning codon rules for translation and mRNA stability.

    RNA
    72Openness
  • BioFM

    6
    M42March 27, 2025dnafoundation_modelgene_expression+5

    265M-parameter genomic foundation model whose BioToken scheme folds variants and region annotations into the tokens for variant effect prediction.

    DNA & Gene
    4Openness
  • seqLens

    7
    George Washington UniversityMarch 12, 2025bertfoundation_modelgenomics+7

    Genomic language models with disentangled attention, pretrained on prokaryotic and eukaryotic genomes for sequence classification and variant effects.

    DNA & Gene
    18Openness
  • Evo 2

    4K28811.8K
    Arc InstituteFebruary 21, 2025dnafoundation_modelgenerative+2

    Genomic foundation model trained on 9.3 trillion DNA base pairs across all domains of life, with 40B parameters and a 1-million-token context.

    DNA & Gene
    92Openness
  • SNPBag

    15
    Zhejiang LabJanuary 29, 2025embeddingsfoundation_modelgenomics+3

    Genomics foundation model for genome-scale SNP analysis, handling imputation, phasing, ancestry, and relatedness from one 0.8B-parameter checkpoint.

    DNA & Gene
    29Openness
  • AIDO.DNA

    1681783
    genbio.aiDecember 1, 2024bertdnafoundation_model+7

    DNA foundation model scaling an encoder-only transformer to 7 billion parameters for variant effect prediction, gene expression, and sequence design.

    DNA & Gene
    27Openness
  • Evo

    1.5K2501.8K
    Arc InstituteNovember 15, 2024dnafoundation_modelgenomics+2

    Genomic foundation model with 7B parameters that models prokaryotic DNA, RNA, and protein at single-nucleotide resolution over a 131k-token context.

    DNA & Gene
    70Openness
  • Harvard Medical School +1 otherNovember 12, 2024chromatingene_expressiongenomics+4

    Conditional autoregressive genomic language model trained on 13.6M mammalian promoters, scoring promoter variants, including indels, zero-shot.

    DNA & Gene
    89Openness
  • ChatNT

    901538
    InstaDeep +1 otherApril 30, 2024gene_expressiongenomicsinstruction_tuning+3

    Conversational agent that answers plain-language questions about DNA, RNA, and protein sequences by coupling a genomics encoder to a language model.

    DNA & GeneLanguage model
    32Openness
  • Med-Gemini

    410
    Google Research +1 otherApril 29, 2024clinical_reasoningelectronic_health_recordsfine_tuning+9

    Family of medical multimodal models built on Gemini, adding uncertainty-guided web search, custom modality encoders, and long-context EHR reasoning.

    Language modelImaging
    8Openness
  • Puffin

    10655
    UT Southwestern Medical CenterApril 26, 2024chromatincnngene_expression+3

    Interpretable model of human transcription initiation that decomposes promoter activity into a minimal set of sequence rules at base-pair resolution.

    DNA & Gene
    23Openness
  • OpenCRISPR-1

    1.2K80
    ProfluentApril 22, 2024de_novo_designdnafoundation_model+5

    AI-designed CRISPR-Cas9 gene editor generated by protein language models trained on 1.2 million CRISPR operons and shown to edit the human genome.

    Protein
    16Openness
  • gLM

    9193
    Harvard University +1 otherApril 3, 2024foundation_modelgenomicsmetagenomics+2

    Genomic language model trained on metagenomic scaffolds that learns protein co-regulation and function by modeling gene context and operon structure.

    DNA & Gene
    30Openness
  • Caduceus

    2482232.6K
    Kuleshov LabMarch 5, 2024foundation_modelgenomicslanguage_model+2

    Bidirectional, reverse-complement equivariant DNA language models built on Mamba state space models for long-range variant effect prediction.

    DNA & Gene
    86Openness
  • GPN

    34931.7K
    Song LabOctober 31, 2023dnafoundation_modelgenomics+2

    DNA language model for genome-wide variant effect prediction, trained by masked language modeling on multispecies genomes with no labeled data.

    DNA & Gene
    93Openness
  • GPN-MSA

    34990216
    UC BerkeleyOctober 11, 2023dnafoundation_modelgenomics+2

    DNA language model for variant effect prediction across coding and non-coding regions, using whole-genome alignments of 100 vertebrate species.

    DNA & Gene
    87Openness
  • AlphaMissense

    6351.7K
    Google DeepMindSeptember 19, 2023fine_tunedgenomicstransfer_learning+2

    Missense variant pathogenicity predictor built on AlphaFold 2 representations, scoring variants across the human proteome at 0.940 AuROC on ClinVar.

    Protein
    44Openness
  • GEARS

    386376
    SNAP (Stanford)August 17, 2023crispr_screen_analysisgenetic_interaction_predictiongenomics+5

    Perturbation prediction model that forecasts transcriptional responses to multi-gene CRISPR perturbations from scRNA-seq and a gene-gene graph.

    Single-cell
    68Openness
  • Med-PaLM M

    552
    Google Research +1 otherJuly 26, 2023generativegenomicshistology+9

    Google's generalist multimodal biomedical AI that encodes clinical text, medical images, and genomics with a single set of weights across 14 tasks.

    ImagingLanguage model
    25Openness