All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 457480 of 518 filtered models

  • Stanford UniversityFebruary 26, 2024chemical_mappingcnnfoundation_model+5

    RNA foundation model trained on chemical-mapping data from millions of sequences, predicting reactivity, secondary structure, and degradation.

    RNA
    74Openness
  • Zhejiang UniversityFebruary 15, 2024disease_diagnosiseegfew_shot+6

    Foundation model spanning invasive SEEG/iEEG and non-invasive EEG in one backbone, with zero- and few-shot transfer across neurological disorders.

    Biosignals
    10Openness
  • RNAformer

    436
    University of FreiburgFebruary 12, 2024structure_predictiontransformer

    RNA secondary structure prediction from a single sequence, without MSAs, using an axial-attention transformer trained with strict homology controls.

    RNA
    53Openness
  • AlphaFlow

    536259
    MITFebruary 7, 2024conformational_ensemble_generationfine_tunedflow_matching+4

    Protein conformational ensemble generator that fine-tunes AlphaFold 2 with flow matching, sampling protein dynamics beyond a single static structure.

    Protein
    79Openness
  • CheXagent

    23075981
    Stanford UniversityJanuary 22, 2024chest_x_rayfoundation_modelimage_classification+7

    Instruction-tuned vision-language foundation model for chest X-ray interpretation, with 8 billion parameters spanning eight clinical task types.

    ImagingLanguage model
    32Openness
  • xTrimoPGLM

    2153
    BioMap +1 otherJanuary 11, 2024foundation_modelprotein_designstructure_prediction+1

    Unified 100-billion-parameter protein language model combining autoencoding and autoregressive objectives for protein understanding and generation.

    Protein
    30Openness
  • EEGFormer

    64
    Microsoft +1 otherJanuary 11, 2024anomaly_detectioneegfoundation_model+5

    EEG foundation model pretrained with vector-quantized self-supervision, yielding interpretable discrete codes that transfer to seizure detection.

    Biosignals
    22Openness
  • Brant

    4294
    Zhejiang UniversityDecember 10, 2023foundation_modelimputationintracranial_eeg+5

    500M-parameter transformer model pretrained on intracranial SEEG recordings for neural signal forecasting, imputation, and seizure detection.

    Biosignals
    75Openness
  • MMM

    11191
    Microsoft +1 otherDecember 10, 2023brain_computer_interfaceeegemotion_recognition+5

    EEG pretraining framework mapping any electrode montage to a unified topology for topology-agnostic representations that transfer across datasets.

    Biosignals
    60Openness
  • T3D

    16
    Imperial College London +4 othersDecember 3, 2023cnncontrastive_learningcross_modal_retrieval+8

    Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.

    ImagingLanguage model
    12Openness
  • UCE

    312174
    Stanford UniversityNovember 29, 2023cross_speciesfoundation_modeltransformer+1

    Single-cell foundation model producing species-agnostic cell embeddings by representing genes through frozen ESM-2 protein language model embeddings.

    Single-cell
    65Openness
  • MHC-Fine

    9
    Stony Brook UniversityNovember 29, 2023antibodyfine_tunedstructure_prediction+2

    AlphaFold fine-tuned via OpenFold on 944 high-resolution MHC-peptide structures, reaching median peptide RMSD of 0.65 Å on held-out complexes.

    Protein
    35Openness
  • Independent ResearcherNovember 14, 2023binding_site_predictionfine_tunedtransfer_learning+2

    LoRA and QLoRA fine-tuning of ESM-2 for token-level prediction of protein binding sites and post-translational modification sites from sequence alone.

    Protein
    93Openness
  • trRosettaRNA

    37204
    Yang LabNovember 9, 2023transformer

    RNA 3D structure prediction pipeline pairing a transformer (RNAformer) that predicts inter-nucleotide geometries with Rosetta energy minimization.

    RNA
    72Openness
  • Neuro-GPT

    22899
    University of Southern California +1 otherNovember 7, 2023brain_computer_interfaceeegfoundation_model+5

    EEG foundation model that pairs a convolutional encoder with a GPT backbone, pretrained by masked-segment reconstruction for low-data BCI decoding.

    Biosignals
    46Openness
  • Alibaba GroupOctober 27, 2023histologyinstruction_tuningmultimodal+4

    Chinese medical vision-language model pairing a Vision Transformer with an LLM to caption medical images and answer clinical questions in Chinese.

    Language modelPathology
    44Openness
  • CXR-LLaVA

    5439180
    Seoul National University +1 otherOctober 22, 2023abnormality_classificationchest_x_rayinstruction_tuning+6

    Chest X-ray vision-language model that generates free-text radiology reports, pairing a CXR-specific image encoder with a 7B LLaMA-2 language model.

    ImagingLanguage model
    27Openness
  • City University of Hong Kong +2 othersOctober 1, 2023cnnct_imagingmultimodal+6

    Abdominal CT segmentation model driven by CLIP text embeddings, covering 25 organs and 6 tumor types with zero-shot extension to new categories.

    Imaging
    26Openness
  • AlphaMissense

    6351.7K
    Google DeepMindSeptember 19, 2023fine_tunedgenomicstransfer_learning+2

    Missense variant pathogenicity predictor built on AlphaFold 2 representations, scoring variants across the human proteome at 0.940 AuROC on ClinVar.

    Protein
    44Openness
  • UniBrain

    39183
    Shanghai Jiao Tong University +3 othersSeptember 13, 2023brain_mricnncontrastive_learning+6

    Vision-language pre-training framework for universal brain MRI diagnosis, learning from imaging-report pairs to cover more than ten brain diseases.

    Imaging
    35Openness
  • EvoDiff

    675226
    Microsoft ResearchSeptember 12, 2023cnnde_novo_designdiffusion+8

    Discrete diffusion model for protein sequence and MSA generation, enabling controllable de novo design directly in sequence space without structure.

    Protein
    84Openness
  • BrainLM

    18130
    Yale University +2 othersSeptember 12, 2023brain_state_forecastingclinical_variable_predictionfmri+7

    fMRI foundation model pretrained with masked autoencoding on roughly 6,700 hours of recordings for clinical prediction and network discovery.

    Biosignals
    25Openness
  • RadFM

    561263
    Shanghai Jiao Tong University +1 otherAugust 4, 2023disease_diagnosisfoundation_modelgenerative+7

    Radiology foundation model that reads interleaved 2D and 3D scans with text for diagnosis, visual question answering, and report generation.

    ImagingLanguage model
    84Openness
  • Med-Flamingo

    452618
    Stanford University +2 othersJuly 27, 2023few_shotin_context_learningmedical_imaging+6

    Multimodal medical vision-language model for few-shot visual question answering, learning new imaging tasks from in-context examples at inference.

    PathologyLanguage model
    18Openness