All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 2548 of 79 filtered models

  • Hacettepe UniversityMarch 19, 2026cheminformaticscontrastive_learningdrug_discovery+5

    Multimodal molecular foundation model fusing SELFIES, 2D graphs, text, and knowledge graphs via contrastive pretraining for property prediction.

    Small molecule
    55Openness
  • AnewOmni

    842
    Tsinghua University +1 otherMarch 15, 2026antibodyde_novo_designdiffusion+6

    All-atom generative foundation model that designs small molecules, peptides, and nanobodies against a target binding site from a single checkpoint.

    ProteinSmall molecule
    63Openness
  • Pengcheng Laboratory +2 othersMarch 13, 2026chain_of_thoughtcheminformaticsdrug_discovery+6

    Molecular reasoning model built on DeepSeek-7B, using chain-of-thought and reinforcement learning for property prediction, generation, and reactions.

    Small moleculeLanguage model
    21Openness
  • Liquid AI +1 otherMarch 3, 2026admet_predictiondrug_discoverydrug_target_activity_prediction+6

    Small-molecule drug discovery foundation model covering ADMET, retrosynthesis, drug-target activity, and molecular optimization in a 2.6B checkpoint.

    Small moleculeLanguage model
    7Openness
  • MolX

    1
    Monash UniversityMarch 1, 2026antibody_drug_conjugate_designbinding_affinity_predictiondrug_discovery+10

    Graph-transformer foundation model pretrained on 3M protein pockets and 5M molecules as E(3)-equivariant graphs for protein-ligand representation.

    Protein
    11Openness
  • MultiPUFFIN

    NTNU +2 othersMarch 1, 2026drug_discoveryfoundation_modelgraph_neural_network+6

    Multimodal foundation model pretrained on ~500K unlabeled PubChem molecules that jointly predicts nine thermophysical properties of small molecules.

    Small molecule
    10Openness
  • VirtualCRISPR

    Chan Zuckerberg Biohub Chicago +2 othersFebruary 28, 2026crisprdrug_discoveryfoundation_model+2

    Large language model trained on functional genomics data to prioritize novel therapeutic targets from genome-wide CRISPR knockout screens.

    DNA & GeneLanguage model
    12Openness
  • Vanderbilt University Medical CenterFebruary 23, 2026drug_discoveryfoundation_modelgraph_neural_network+4

    Knowledge-graph foundation model for drug repurposing, grounding a biomedical graph in cell-type-specific genetic associations to rank indications.

    Single-cellSmall molecule
    11Openness
  • MACE-POLAR-1

    16
    University of CambridgeFebruary 23, 2026drug_discoveryequivariant_neural_networkfoundation_model+5

    Polarizable machine-learning interatomic potential extending MACE with long-range electrostatics, trained on 100M OMol25 DFT calculations.

    Small moleculeProtein
    19Openness
  • MMPT-RAG

    Emory UniversityFebruary 18, 2026drug_discoveryfoundation_modelgenerative+3

    Retrieval-augmented model for matched molecular pair transformations, proposing localized analog edits guided by retrieved reference compounds.

    Small molecule
    16Openness
  • BioKinema

    3
    International Digital Economy AcademyFebruary 15, 2026conformational_samplingdiffusiondrug_discovery+5

    Diffusion model that generates continuous-time, all-atom biomolecular trajectories, reproducing conformational kinetics far more cheaply than MD.

    ProteinSmall molecule
    13Openness
  • TerraBind

    Terray TherapeuticsFebruary 12, 2026binding_affinitydrug_discoveryfoundation_model+3

    Protein-ligand foundation model that maps coarse-grained structural representations directly to binding affinity, running ~26x faster than Boltz-2.

    ProteinSmall molecule
    24Openness
  • IsoDDE

    Isomorphic LabsFebruary 10, 2026binding_affinity_predictiondiffusiondrug_discovery+6

    Unified drug design engine for protein-ligand structure prediction, binding affinity estimation, and compound generation from Isomorphic Labs.

    Protein
    13Openness
  • BioLM-Score

    Shenzhen UniversityFebruary 9, 2026binding_affinity_predictiondrug_discoverymixture_density_network+4

    Protein-ligand scoring function that conditions probabilistic geometric potentials on language model priors to rank docked poses and binding affinity.

    ProteinSmall molecule
    11Openness
  • Keshav Memorial Engineering CollegeFebruary 6, 2026diffusiondrug_discoverygenerative+3

    E(3)-equivariant diffusion model for macrocycle design that turns acyclic molecules into macrocycles, with a transformer choosing where to cyclize.

    Small molecule
    8Openness
  • FoldVision

    Heinrich Heine University DüsseldorfJanuary 23, 2026cnndrug_discoveryenzymes+5

    Structure-based protein encoder that voxelizes every heavy atom into a 3D grid, learning orientation-robust representations for protein function.

    Protein
    20Openness
  • AQAffinity

    16
    SandboxAQJanuary 20, 2026binding_affinitydiffusiondrug_discovery+3

    Structure-free protein-ligand binding affinity predictor built on OpenFold3 that scores potency from a protein sequence and a ligand SMILES string.

    ProteinSmall molecule
    64Openness
  • ConGLUDe

    Johannes Kepler University LinzJanuary 14, 2026binding_site_predictioncontrastive_learningdrug_discovery+7

    Contrastive geometric model unifying structure- and ligand-based drug design for zero-shot virtual screening, target fishing, and pocket selection.

    ProteinSmall molecule
    8Openness
  • NetMedGPT

    2
    University of Hamburg +1 otherJanuary 4, 2026drug_discoverydrug_repurposingfoundation_model+6

    Transformer foundation model pretrained on a biomedical knowledge graph for zero-shot drug repurposing, target, and adverse-effect prediction.

    Language modelSmall molecule
    24Openness
  • GEMGen

    2
    Westlake University +1 otherJanuary 3, 2026de_novo_designdrug_discoverygenerative+5

    Generative language model for phenotype-driven drug discovery, proposing small-molecule structures from up- and down-regulated gene signatures.

    Small moleculeSingle-cell
    9Openness
  • PeptiVerse

    University of Pennsylvania +1 otherJanuary 3, 2026binding_affinity_predictiondrug_discoverygradient_boosting+4

    Peptide developability predictor scoring solubility, permeability, toxicity, and binding from amino-acid sequences or chemically modified SMILES.

    ProteinSmall molecule
    81Openness
  • SynPROTAC

    Sun Yat-sen UniversityDecember 12, 2025de_novo_designdrug_discoverygenerative+3

    Designs synthesizable PROTAC degraders from reaction templates and purchasable building blocks, with reinforcement learning tuning the generator.

    Small molecule
    11Openness
  • OMTRA

    68
    University of Pittsburgh +1 otherDecember 4, 2025conformer_generationde_novo_designdrug_discovery+8

    Structure-based drug design model that unifies de novo generation, docking, conformer generation, and pharmacophore conditioning via flow matching.

    Small moleculeProtein
    72Openness
  • FlexiFlow

    1
    AstraZeneca +4 othersNovember 21, 2025conformer_generationde_novo_designdrug_discovery+7

    Flow-matching model that jointly samples 3D de novo molecules and several low-energy conformers, extending to pocket-conditioned ligand design.

    Small moleculeProtein
    19Openness