All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 337–360 of 518 filtered models
STATE
623117255Virtual cell transformer that predicts how cells respond to genetic, chemical, or signaling perturbations, generalizing to unseen cellular contexts.
Single-cell21Openness- University of Oregon +1 otherJune 24, 2025ancestral_recombination_graph_inferencecoalescence_time_estimationgenomics+4
Decoder-only transformer that recasts ancestral recombination graph inference as next-token prediction, estimating coalescence times from variation.
DNA & Gene83Openness 5.6M-parameter multimodal foundation model fusing fMRI time series with diffusion-MRI structural connectivity in a shared ROI embedding space.
ImagingBiosignals71OpennessChiron-o1
601421Medical multimodal LLM (2B and 8B) trained for generalizable, step-by-step clinical reasoning via Mentor-Intern Collaborative Search.
PathologyImaging67OpennessLucaVirus
745161Multimodal viral foundation model over nucleotide and protein sequence, built for virus discovery, function annotation, and antibody design.
DNA & GeneProtein88OpennessPhysioWave
18914—Physiological signal foundation model for ECG, EMG, and EEG pairing learnable multi-scale wavelet decomposition with masked transformer pretraining.
Biosignals80OpennessRocketSHP
123—Proteome-scale protein dynamics prediction from sequence or structure, predicting residue flexibility, correlations, and conformational states.
Protein79OpennessSensorLM
—58—Google Research +2 othersJune 10, 2025activity_recognitioncontrastive_learningcross_modal_retrieval+6Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.
BiosignalsLanguage model41OpennessLingshu
3199145KGeneralist medical multimodal LLM for image understanding, visual question answering, and report generation across twelve-plus imaging modalities.
ImagingLanguage model70OpennessBioMed Multi-Omic
62—26Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.
DNA & Gene84OpennessDreaMS
19572—Self-supervised transformer pretrained on millions of tandem mass spectra, giving embeddings for spectral annotation and fingerprint prediction.
MetabolomicsSmall molecule98OpennessBrainOmni
7128—Brain foundation model unifying EEG and MEG in a single encoder via a shared discrete tokenizer that transfers across sensor layouts and montages.
Biosignals80OpennessUniBiomed
7210119Hong Kong University of Science and Technology +2 othersApril 30, 2025foundation_modelhistologymultimodal+6Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.
ImagingLanguage model64OpennessTranscriptFormer
15736—Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.
Single-cell67OpennessGMAI-VL-R1
1929—General medical vision-language model trained with reinforcement learning to reason step by step over medical images for diagnosis and visual QA.
ImagingLanguage model17OpennessTxGemma
2566441Open therapeutics foundation models from Google, built on Gemma-2, for drug-discovery property prediction and conversational reasoning.
Language modelSmall molecule58OpennessDyna-1
801314Protein dynamics model predicting per-residue probability of microsecond-millisecond conformational exchange from sequence or structure.
Protein79OpennessMed-R1
129140—Medical vision-language model trained with reinforcement learning for generalizable reasoning across eight imaging modalities and five question types.
ImagingLanguage model45Openness