All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 337360 of 518 filtered models

  • STATE

    623117255
    Arc InstituteJune 27, 2025drug_discoveryfoundation_modelgene_expression+4

    Virtual cell transformer that predicts how cells respond to genetic, chemical, or signaling perturbations, generalizing to unseen cellular contexts.

    Single-cell
    21Openness
  • MOJO

    4045
    InstaDeepJune 25, 2025bertdna_methylationfoundation_model+7

    Bimodal masked language model that jointly encodes bulk RNA-seq expression and DNA methylation into patient-level embeddings for cancer genomics.

    RNADNA & Gene
    29Openness
  • University of Oregon +1 otherJune 24, 2025ancestral_recombination_graph_inferencecoalescence_time_estimationgenomics+4

    Decoder-only transformer that recasts ancestral recombination graph inference as next-token prediction, estimating coalescence times from variation.

    DNA & Gene
    83Openness
  • Monash UniversityJune 23, 2025classificationconnectomicsfmri+7

    5.6M-parameter multimodal foundation model fusing fMRI time series with diffusion-MRI structural connectivity in a shared ROI embedding space.

    ImagingBiosignals
    71Openness
  • Chiron-o1

    601421
    Shanghai AI Laboratory +2 othersJune 20, 2025chain_of_thoughtclinical_reasoninghistology+6

    Medical multimodal LLM (2B and 8B) trained for generalizable, step-by-step clinical reasoning via Mentor-Intern Collaborative Search.

    PathologyImaging
    67Openness
  • LucaVirus

    745161
    Sun Yat-sen University +1 otherJune 14, 2025antibody_designfoundation_modelgenomics+8

    Multimodal viral foundation model over nucleotide and protein sequence, built for virus discovery, function annotation, and antibody design.

    DNA & GeneProtein
    88Openness
  • PhysioWave

    18914
    ETH Zurich +2 othersJune 12, 2025arrhythmia_detectionecgeeg+9

    Physiological signal foundation model for ECG, EMG, and EEG pairing learnable multi-scale wavelet decomposition with masked transformer pretraining.

    Biosignals
    80Openness
  • RocketSHP

    123
    Flatiron InstituteJune 12, 2025dynamics_predictionmolecular_dynamicstransfer_learning+2

    Proteome-scale protein dynamics prediction from sequence or structure, predicting residue flexibility, correlations, and conformational states.

    Protein
    79Openness
  • SensorLM

    58
    Google Research +2 othersJune 10, 2025activity_recognitioncontrastive_learningcross_modal_retrieval+6

    Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.

    BiosignalsLanguage model
    41Openness
  • Lingshu

    3199145K
    DAMO Academy +1 otherJune 8, 2025clinical_reasoningfoundation_modelhistology+7

    Generalist medical multimodal LLM for image understanding, visual question answering, and report generation across twelve-plus imaging modalities.

    ImagingLanguage model
    70Openness
  • IBM ResearchJune 1, 2025cell_type_annotationfoundation_modelgene_expression+6

    Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.

    DNA & Gene
    84Openness
  • QoQ-Med

    5239476
    MITMay 31, 2025ecgfoundation_modelhistology+7

    Multimodal clinical foundation model reasoning jointly over 2D and 3D medical images, ECG time-series, and text reports across nine clinical domains.

    ImagingBiosignalsLanguage model
    74Openness
  • DreaMS

    19572
    IOCB Prague +1 otherMay 23, 2025chemical_property_predictionfoundation_modelmass_spectrometry+7

    Self-supervised transformer pretrained on millions of tandem mass spectra, giving embeddings for spectral annotation and fingerprint prediction.

    MetabolomicsSmall molecule
    98Openness
  • BrainOmni

    7128
    Tsinghua University +3 othersMay 18, 2025brain_signal_classificationeegfoundation_model+7

    Brain foundation model unifying EEG and MEG in a single encoder via a shared discrete tokenizer that transfers across sensor layouts and montages.

    Biosignals
    80Openness
  • UniBiomed

    7210119
    Hong Kong University of Science and Technology +2 othersApril 30, 2025foundation_modelhistologymultimodal+6

    Universal foundation model that jointly generates diagnostic text and segments the corresponding targets across ten biomedical imaging modalities.

    ImagingLanguage model
    64Openness
  • Chan Zuckerberg InitiativeApril 29, 2025cell_type_annotationcross_speciesdisease_prediction+6

    Generative single-cell foundation model trained on 112 million cells from 12 species, autoregressively modeling gene identities and expression counts.

    Single-cell
    67Openness
  • CodonFM

    8750
    NVIDIA +1 otherApril 25, 2025bertde_novo_designfoundation_model+7

    Codon-resolution language models trained on 130 million coding sequences from 20,000 species, learning codon rules for translation and mRNA stability.

    RNA
    72Openness
  • ProGen3

    11454219
    ProfluentApril 16, 2025de_novo_designfoundation_modelgenerative+6

    Sparse mixture-of-experts autoregressive protein language model family pretrained on 1.5 trillion amino acid tokens with compute-optimal scaling.

    Protein
    33Openness
  • RAG-ESM

    2716
    EPFLApril 2, 2025de_novo_designgenerativemotif_scaffolding+5

    Retrieval-augmented protein language model that conditions ESM-2 on homologous sequences via cross-attention for conditional sequence generation.

    Protein
    90Openness
  • GMAI-VL-R1

    1929
    Shanghai AI Laboratory +6 othersApril 2, 2025histologylanguage_modelmedical_image_diagnosis+7

    General medical vision-language model trained with reinforcement learning to reason step by step over medical images for diagnosis and visual QA.

    ImagingLanguage model
    17Openness
  • BioFM

    6
    M42March 27, 2025dnafoundation_modelgene_expression+5

    265M-parameter genomic foundation model whose BioToken scheme folds variants and region annotations into the tokens for variant effect prediction.

    DNA & Gene
    4Openness
  • TxGemma

    2566441
    Google DeepMind +1 otherMarch 25, 2025drug_discoveryfoundation_modelinstruction_tuning+2

    Open therapeutics foundation models from Google, built on Gemma-2, for drug-discovery property prediction and conversational reasoning.

    Language modelSmall molecule
    58Openness
  • Dyna-1

    801314
    Scripps ResearchMarch 19, 2025dynamics_predictionfoundation_modelnmr+2

    Protein dynamics model predicting per-residue probability of microsecond-millisecond conformational exchange from sequence or structure.

    Protein
    79Openness
  • Med-R1

    129140
    Emory University +4 othersMarch 18, 2025disease_diagnosisgenerativehistology+7

    Medical vision-language model trained with reinforcement learning for generalizable reasoning across eight imaging modalities and five question types.

    ImagingLanguage model
    45Openness