All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 265288 of 316 filtered models

  • Google ResearchDecember 19, 2023biomarker_predictioncancer_detectionembeddings+4

    Histopathology foundation model that encodes 224x224 H&E patches into compact 384-dimensional embeddings for tumor and biomarker classifiers.

    Pathology
    17Openness
  • Brant

    4294
    Zhejiang UniversityDecember 10, 2023foundation_modelimputationintracranial_eeg+5

    500M-parameter transformer model pretrained on intracranial SEEG recordings for neural signal forecasting, imputation, and seizure detection.

    Biosignals
    75Openness
  • MMM

    11191
    Microsoft +1 otherDecember 10, 2023brain_computer_interfaceeegemotion_recognition+5

    EEG pretraining framework mapping any electrode montage to a unified topology for topology-agnostic representations that transfer across datasets.

    Biosignals
    60Openness
  • AppleDecember 8, 2023cardiovascularcnncontrastive_learning+6

    Self-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.

    Biosignals
    5Openness
  • Google ResearchDecember 4, 2023acoustic_biomarkersaudio_classificationautoencoder+6

    Health acoustics foundation model that turns short clips of coughs and breaths into embeddings for building acoustic biomarker models with less data.

    Biosignals
  • T3D

    16
    Imperial College London +4 othersDecember 3, 2023cnncontrastive_learningcross_modal_retrieval+8

    Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.

    ImagingLanguage model
    12Openness
  • SegVol

    386122747
    Beijing Academy of Artificial IntelligenceNovember 22, 2023ctfoundation_modelmultimodal+4

    Promptable 3D foundation model for volumetric CT segmentation, covering over 200 anatomical categories through point, box, and free-text prompts.

    Imaging
    100Openness
  • Neuro-GPT

    22899
    University of Southern California +1 otherNovember 7, 2023brain_computer_interfaceeegfoundation_model+5

    EEG foundation model that pairs a convolutional encoder with a GPT backbone, pretrained by masked-segment reconstruction for low-data BCI decoding.

    Biosignals
    46Openness
  • CXR-CLIP

    123138
    Kakao BrainOctober 20, 2023bertchest_x_raycnn+8

    Large-scale chest X-ray vision-language pretraining model that learns image-report alignment for zero-shot and few-shot radiograph classification.

    Imaging
    18Openness
  • VisionFM

    12958
    Chinese University of Hong KongOctober 8, 2023biomarker_predictionfoundation_modeloct+3

    Multi-modal ophthalmic foundation model for generalist eye AI, spanning fundus imaging and OCT for disease screening, segmentation, and biomarkers.

    ImagingPathology
    14Openness
  • Virchow

    4623311K
    Paige AISeptember 14, 2023digital_pathologyfoundation_modelhistology+3

    Histopathology foundation models: self-supervised vision transformers pretrained on millions of whole-slide images for tile-level feature extraction.

    Pathology
    42Openness
  • RETFound

    660938105
    University College London +1 otherSeptember 13, 2023disease_detectionfoundation_modelimage_classification+7

    Self-supervised foundation model for retinal imaging, pretrained on 1.6 million unlabelled fundus and OCT scans to detect ocular and systemic disease.

    ImagingPathology
    30Openness
  • EvoDiff

    675226
    Microsoft ResearchSeptember 12, 2023cnnde_novo_designdiffusion+8

    Discrete diffusion model for protein sequence and MSA generation, enabling controllable de novo design directly in sequence space without structure.

    Protein
    84Openness
  • BrainLM

    18130
    Yale University +2 othersSeptember 12, 2023brain_state_forecastingclinical_variable_predictionfmri+7

    fMRI foundation model pretrained with masked autoencoding on roughly 6,700 hours of recordings for clinical prediction and network discovery.

    Biosignals
    25Openness
  • GEARS

    386376
    SNAP (Stanford)August 17, 2023crispr_screen_analysisgenetic_interaction_predictiongenomics+5

    Perturbation prediction model that forecasts transcriptional responses to multi-gene CRISPR perturbations from scRNA-seq and a gene-gene graph.

    Single-cell
    68Openness
  • ProstT5

    31817.2K
    RostlabJuly 25, 2023foundation_modelinverse_foldinglanguage_model+5

    Bilingual protein language model that translates bidirectionally between amino acid sequences and the 3Di structural alphabet for inverse folding.

    Protein
    76Openness
  • University of TübingenJuly 25, 2023dna_methylationepigenomic_predictionepigenomics+5

    Multi-language transformer framework using five pre-trained language models to predict DNA methylation (6mA, 4mC, 5hmC) across species.

    DNA & Gene
    89Openness
  • Phikon

    17211421.7K
    OwkinJuly 21, 2023biomarker_predictionfoundation_modelhistology+3

    Self-supervised histopathology foundation models for H&E whole-slide images. Phikon-v2 is a ViT-L/16 DINOv2 encoder used for biomarker prediction.

    Pathology
    35Openness
  • TULIP

    1343
    Ecole Normale SuperieureJuly 19, 2023antibodydrug_discoverylanguage_model+3

    Unsupervised transformer language model for TCR-epitope binding prediction that generalizes to unseen epitopes without needing negative examples.

    Protein
    60Openness
  • mEthAE

    34
    Wageningen University & ResearchJuly 18, 2023autoencoderdna_methylationepigenomic_prediction+3

    Chromosome-wise explainable autoencoder that compresses DNA methylation array data up to 400-fold while keeping CpG groupings interpretable.

    DNA & Gene
    47Openness
  • GrayLabJuly 17, 2023antibodyantibody_designgraph_neural_network+5

    Structure-conditioned graph transformer trained with masked language modeling to learn residue encodings for inverse folding and antibody design.

    Protein
    52Openness
  • XA4C

    3
    University of CalgaryJuly 17, 2023autoencodercell_type_annotationgene_expression+3

    Explainable autoencoder for transcriptome analysis that uses SHAP attribution on latent variables to identify critical genes driving gene expression.

    Single-cell
    58Openness
  • TencentAILabHealthcareJuly 4, 2023cross_modality_translationfoundation_modelgenerative+5

    Generative transformer that translates single-cell transcriptomes into proteomes, inferring missing protein abundance from RNA expression alone.

    Single-cell
    33Openness
  • Endo-FM

    230135
    Chinese University of Hong Kong +1 otherJune 29, 2023detectionendoscopyfoundation_model+5

    Endoscopy video foundation model that learns spatial-temporal representations from unlabeled clips for classification, segmentation, and detection.

    Imaging
    77Openness