All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 265–288 of 316 filtered models
Path Foundation
—13104Histopathology foundation model that encodes 224x224 H&E patches into compact 384-dimensional embeddings for tumor and biomarker classifiers.
Pathology17OpennessBrant
4294—500M-parameter transformer model pretrained on intracranial SEEG recordings for neural signal forecasting, imputation, and seizure detection.
Biosignals75OpennessSelf-supervised foundation models for wearable PPG and ECG signals, trained with contrastive learning on Apple Heart and Movement Study recordings.
Biosignals5OpennessHealth acoustics foundation model that turns short clips of coughs and breaths into embeddings for building acoustic biomarker models with less data.
BiosignalsT3D
—16—Vision-language pretraining for 3D CT volumes, aligning scans with their radiology reports for zero-shot classification, retrieval, and segmentation.
ImagingLanguage model12OpennessSegVol
386122747Promptable 3D foundation model for volumetric CT segmentation, covering over 200 anatomical categories through point, box, and free-text prompts.
Imaging100OpennessNeuro-GPT
22899—University of Southern California +1 otherNovember 7, 2023brain_computer_interfaceeegfoundation_model+5EEG foundation model that pairs a convolutional encoder with a GPT backbone, pretrained by masked-segment reconstruction for low-data BCI decoding.
Biosignals46OpennessCXR-CLIP
123138—Large-scale chest X-ray vision-language pretraining model that learns image-report alignment for zero-shot and few-shot radiograph classification.
Imaging18OpennessVisionFM
12958—Multi-modal ophthalmic foundation model for generalist eye AI, spanning fundus imaging and OCT for disease screening, segmentation, and biomarkers.
ImagingPathology14OpennessRETFound
660938105University College London +1 otherSeptember 13, 2023disease_detectionfoundation_modelimage_classification+7Self-supervised foundation model for retinal imaging, pretrained on 1.6 million unlabelled fundus and OCT scans to detect ocular and systemic disease.
ImagingPathology30OpennessEvoDiff
675226—Discrete diffusion model for protein sequence and MSA generation, enabling controllable de novo design directly in sequence space without structure.
Protein84OpennessBrainLM
18130—Yale University +2 othersSeptember 12, 2023brain_state_forecastingclinical_variable_predictionfmri+7fMRI foundation model pretrained with masked autoencoding on roughly 6,700 hours of recordings for clinical prediction and network discovery.
Biosignals25OpennessGEARS
386376—Perturbation prediction model that forecasts transcriptional responses to multi-gene CRISPR perturbations from scRNA-seq and a gene-gene graph.
Single-cell68OpennessMuLan-Methyl
7105Multi-language transformer framework using five pre-trained language models to predict DNA methylation (6mA, 4mC, 5hmC) across species.
DNA & Gene89OpennessTULIP
1343—Unsupervised transformer language model for TCR-epitope binding prediction that generalizes to unseen epitopes without needing negative examples.
Protein60OpennessmEthAE
34—Chromosome-wise explainable autoencoder that compresses DNA methylation array data up to 400-fold while keeping CpG groupings interpretable.
DNA & Gene47OpennessMaskedProteinEnT
123—Structure-conditioned graph transformer trained with masked language modeling to learn residue encodings for inverse folding and antibody design.
Protein52OpennessXA4C
3——Explainable autoencoder for transcriptome analysis that uses SHAP attribution on latent variables to identify critical genes driving gene expression.
Single-cell58OpennessscTranslator
978—Generative transformer that translates single-cell transcriptomes into proteomes, inferring missing protein abundance from RNA expression alone.
Single-cell33OpennessEndo-FM
230135—Endoscopy video foundation model that learns spatial-temporal representations from unlabeled clips for classification, segmentation, and detection.
Imaging77Openness