All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 265288 of 552 filtered models

  • Chai-2

    58
    Chai DiscoveryJuly 5, 2025antibodyantibody_designde_novo_design+3

    Multimodal all-atom generative model for zero-shot de novo antibody and protein-binder design, validated by wet-lab hit rates from small batches.

    Protein
    7Openness
  • MORPH

    156
    Broad Institute +1 otherJuly 2, 2025attentioncell_paintingfoundation_model+5

    Single-cell perturbation-response model that predicts transcriptomic and imaging outcomes of unseen genetic perturbations via a VAE with attention.

    Single-cellImaging
    7Openness
  • University of Oxford +5 othersJuly 1, 2025clinical_outcome_predictioncross_modality_generationdiagnosis+8

    Multimodal foundation model for cardiac biosignals, pretrained by masked modeling on ECG, PPG, and clinical text from ~1.7 million individuals.

    BiosignalsLanguage model
    26Openness
  • University of Rijeka +1 otherJuly 1, 2025cnnfoundation_modelimage_classification+4

    Family of CNN foundation models pretrained on multimodal radiology images, a domain-specific alternative to ImageNet transfer learning weights.

    Imaging
    53Openness
  • AppleJune 30, 2025foundation_modelmambarepresentation_learning+3

    Apple's foundation model trained on behavioral signals from wearables, modeling 27 HealthKit metrics to improve predictions across 57 health tasks.

    Biosignals
    7Openness
  • AlphaGenome

    2K154
    Google DeepMindJune 27, 2025chromatinfoundation_modelgene_expression+4

    DNA foundation model that predicts thousands of functional genomic tracks, from expression and splicing to chromatin, at single base-pair resolution.

    DNA & Gene
    49Openness
  • STATE

    623117255
    Arc InstituteJune 27, 2025drug_discoveryfoundation_modelgene_expression+4

    Virtual cell transformer that predicts how cells respond to genetic, chemical, or signaling perturbations, generalizing to unseen cellular contexts.

    Single-cell
    21Openness
  • MOJO

    4045
    InstaDeepJune 25, 2025bertdna_methylationfoundation_model+7

    Bimodal masked language model that jointly encodes bulk RNA-seq expression and DNA methylation into patient-level embeddings for cancer genomics.

    RNADNA & Gene
    29Openness
  • Monash UniversityJune 23, 2025classificationconnectomicsfmri+7

    5.6M-parameter multimodal foundation model fusing fMRI time series with diffusion-MRI structural connectivity in a shared ROI embedding space.

    ImagingBiosignals
    71Openness
  • EyeCLIP

    8765
    The Hong Kong Polytechnic University +5 othersJune 21, 2025clipcontrastive_learningcross_modal_retrieval+11

    CLIP-based vision-language foundation model for eye imaging, enabling zero-shot disease detection and cross-modal retrieval across 11 modalities.

    ImagingLanguage model
    15Openness
  • LucaVirus

    745161
    Sun Yat-sen University +1 otherJune 14, 2025antibody_designfoundation_modelgenomics+8

    Multimodal viral foundation model over nucleotide and protein sequence, built for virus discovery, function annotation, and antibody design.

    DNA & GeneProtein
    88Openness
  • PhysioWave

    18914
    ETH Zurich +2 othersJune 12, 2025arrhythmia_detectionecgeeg+9

    Physiological signal foundation model for ECG, EMG, and EEG pairing learnable multi-scale wavelet decomposition with masked transformer pretraining.

    Biosignals
    80Openness
  • NeuroSTORM

    1164
    Chinese University of Hong Kong +7 othersJune 11, 2025disease_diagnosisfmrifoundation_model+6

    Spatiotemporal foundation model that learns representations directly from 4D functional MRI volumes for disease diagnosis and phenotype prediction.

    ImagingBiosignals
    78Openness
  • SensorLM

    58
    Google Research +2 othersJune 10, 2025activity_recognitioncontrastive_learningcross_modal_retrieval+6

    Sensor-language foundation models aligning wearable biosignals with text for zero-shot activity recognition, retrieval, and sensor captioning.

    BiosignalsLanguage model
    41Openness
  • Lingshu

    3199145K
    DAMO Academy +1 otherJune 8, 2025clinical_reasoningfoundation_modelhistology+7

    Generalist medical multimodal LLM for image understanding, visual question answering, and report generation across twelve-plus imaging modalities.

    ImagingLanguage model
    70Openness
  • KRONOS

    20432582
    Mahmood Lab +8 othersJune 3, 2025cell_phenotypingfoundation_modelimage_retrieval+4

    Spatial proteomics foundation model, marker-aware and panel-agnostic, pretrained on 47 million multiplexed tissue-imaging patches from 175 markers.

    Spatial omicsPathology
    12Openness
  • Boltz-2

    4.1K496
    MIT CSAIL +1 otherJune 1, 2025binding_affinitydiffusiondrug_discovery+2

    Open model that jointly predicts biomolecular structure and small-molecule binding affinity, approaching FEP+ accuracy in seconds on a single GPU.

    Protein
    71Openness
  • IBM ResearchJune 1, 2025cell_type_annotationfoundation_modelgene_expression+6

    Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.

    DNA & Gene
    84Openness
  • QoQ-Med

    5239476
    MITMay 31, 2025ecgfoundation_modelhistology+7

    Multimodal clinical foundation model reasoning jointly over 2D and 3D medical images, ECG time-series, and text reports across nine clinical domains.

    ImagingBiosignalsLanguage model
    74Openness
  • BioCLIP 2

    774348.5K
    Imageomics InstituteMay 29, 2025biodiversitycontrastive_learningfoundation_model+6

    Vision foundation model for the tree of life, trained on 214 million organism images across 952,000 taxa for zero-shot species classification.

    Imaging
    93Openness
  • DreaMS

    19572
    IOCB Prague +1 otherMay 23, 2025chemical_property_predictionfoundation_modelmass_spectrometry+7

    Self-supervised transformer pretrained on millions of tandem mass spectra, giving embeddings for spectral annotation and fingerprint prediction.

    MetabolomicsSmall molecule
    98Openness
  • BrainOmni

    7128
    Tsinghua University +3 othersMay 18, 2025brain_signal_classificationeegfoundation_model+7

    Brain foundation model unifying EEG and MEG in a single encoder via a shared discrete tokenizer that transfers across sensor layouts and montages.

    Biosignals
    80Openness
  • Cellpose-SAM

    2.3K192
    HHMI Janelia Research CampusMay 1, 2025cell_biologyfoundation_modelgeneralist_model+4

    Generalist cell segmentation model pairing SAM's ViT-L encoder with Cellpose flow fields, outperforming average human annotators on its benchmark.

    Imaging
    50Openness
  • University of Cambridge +1 otherMay 1, 2025brain_mrifoundation_modelhypergraph_neural_network+5

    Brain MRI segmentation foundation model trained on 66,000+ image-label pairs across 14 MRI sub-modalities, with a hypergraph dynamic adapter.

    Imaging
    26Openness