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IBM

A multinational technology company spanning hybrid cloud, enterprise software, and semiconductors, with a research arm applying AI to the sciences.

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8 models(4 Small molecule, 4 Protein, 2 Single-cell, 1 Language model, 1 DNA & Gene)

Labs & Groups (1)

Models (8)

DemoDiff

University of Notre Dame / IBM Research / MIT

Released October 9, 2025

62217

Graph diffusion transformer for in-context molecular design, adapting to new tasks from a few molecule-property demonstrations without fine-tuning.

Small molecule

BioVERSE

IBM Research

Released October 1, 2025

2

Multimodal biomedical framework aligning frozen single-cell and protein model encoders to an LLM's embedding space for zero-shot reasoning.

Language modelSingle-cellProtein

BioMed Multi-Omic

IBM Research

Released June 1, 2025

2062

Open-source framework for building RNA and DNA foundation models, featuring WCED pretraining for transcriptomics and SNP-aware encoding for genomics.

DNA & Gene

MAMMAL

IBM Research

Released October 28, 2024

81K118

Multi-modal, multi-task biological foundation model trained on 2 billion samples spanning proteins, small molecules, and single-cell gene expression.

ProteinSmall moleculeSingle-cell

BioMed Multi-View

IBM Research

Released October 25, 2024

75.1K46

Molecular foundation model that late-fuses graph, image, and SMILES encoders into one embedding for molecular property and drug target prediction.

Small molecule

GearNet

Mila / IBM Research

Released February 1, 2023

329327

Geometric relational graph neural network that encodes 3D protein structures through geometry-aware message passing and self-supervised pretraining.

Protein

ReprogBERT

IBM

Released January 1, 2023

3924

Antibody CDR design model that reprograms a frozen English BERT for sequence infilling, avoiding training a dedicated protein language model.

Protein

MoLFormer-XL

IBM Research

Released October 3, 2022

595204.2K406

Large-scale chemical language model trained on 1.1 billion SMILES strings using linear attention transformers for molecular property prediction.

Small molecule