Cancer Science Institute of Singapore

RNA–small-molecule interaction model that scores binding and localizes the pocket to individual nucleotides in one pass, from sequence and SMILES.

Infers gene-centered chromatin interactions from bulk RNA-seq alone, mapping 3D genome changes across 12,347 tumor and normal transcriptomes.

Chromatin interaction prediction from DNA sequence alone, calling CTCF-, RNA Pol II- and Hi-C-associated loops between open chromatin regions.