All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 110 of 10 filtered models

  • MIMIC

    37
    Polymathic AIApril 27, 2026foundation_modelgenerativegenomics+6

    Generative multimodal foundation model spanning DNA, RNA, and protein, with any-to-any inference across genome, transcriptome, and proteome.

    RNAProteinDNA & Gene
    16Openness
  • PlantCAD2

    974.2K
    Cornell UniversityApril 3, 2026foundation_modelfunctional_annotationgene_expression+7

    Long-context plant DNA language model, 676M parameters on a Mamba2 backbone, pretrained on 65 angiosperm genomes for cross-species variant annotation.

    DNA & Gene
    69Openness
  • University of Science and Technology of ChinaAugust 7, 2025bertfoundation_modellanguage_model+8

    RNA foundation model pretrained jointly on sequences and secondary structures for structure prediction, homology and splice site classification.

    RNA
    92Openness
  • AlphaGenome

    2K154
    Google DeepMindJune 27, 2025chromatinfoundation_modelgene_expression+4

    DNA foundation model that predicts thousands of functional genomic tracks, from expression and splicing to chromatin, at single base-pair resolution.

    DNA & Gene
    49Openness
  • BioFM

    6
    M42March 27, 2025dnafoundation_modelgene_expression+5

    265M-parameter genomic foundation model whose BioToken scheme folds variants and region annotations into the tokens for variant effect prediction.

    DNA & Gene
    4Openness
  • TrASPr

    13
    University of PennsylvaniaJanuary 20, 2025splicingsplicing_predictiontransformer+1

    Multi-transformer model that predicts tissue-specific alternative splicing outcomes and generalizes zero-shot to unseen cellular conditions.

    RNA
    33Openness
  • Borzoi

    256256
    Calico Life SciencesJanuary 9, 2025cnngene_expressionregulatory_genomics+5

    Regulatory genomics model predicting cell-type-specific RNA-seq coverage from DNA sequence, unifying transcription, splicing, and polyadenylation.

    DNA & Gene
    92Openness
  • AIDO.RNA

    168261.1K
    genbio.aiNovember 28, 2024bertfoundation_modellanguage_model+7

    RNA foundation model with 1.6 billion parameters, pretrained on 42 million non-coding RNA sequences for structure prediction and RNA sequence design.

    RNA
    18Openness
  • Isoformer

    9011722
    InstaDeepJune 20, 2024foundation_modelgene_expressionmultimodal+4

    Multimodal model fusing pre-trained DNA, RNA, and protein encoders through cross-attention to predict tissue-specific transcript isoform expression.

    RNADNA & GeneProtein
    26Openness
  • Biomed AIJanuary 1, 2023bertfoundation_modellanguage_model+1

    RNA language model pre-trained on 2M+ pre-mRNA sequences from 72 vertebrate species for splice-site prediction and variant effect analysis.

    RNA
    77Openness