All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 111 of 11 filtered models

  • CryoDiff

    Shandong UniversityJune 6, 2026cryo_emdiffusiongenerative+2

    Uncertainty-aware diffusion model that enhances cryo-EM density maps while estimating voxel-wise confidence via Monte Carlo sampling.

    Imaging
    20Openness
  • Universidad Carlos III de MadridJanuary 22, 2026cnncryo_emdenoising+5

    A NAFNet backbone trained with a perceptual GAN objective for high-fidelity bioimage restoration, achieving best LPIPS on 7 of 8 AI4Life benchmarks.

    Imaging
    16Openness
  • MAGNET

    Huazhong University of Science and TechnologyDecember 25, 2025denoisingfluorescence_microscopyfoundation_model+7

    An all-in-one foundation model for microscopic image restoration, unifying 8 tasks across 5 microscopy modalities and 2D/3D data, with zero-shot inference on unseen imaging systems.

    Imaging
    7Openness
  • EMReady2

    12
    Huazhong University of Science and TechnologySeptember 3, 2025cryo_emcryo_etimage_restoration+4

    A Mamba-based dual-branch UNet that enhances cryo-EM and cryo-ET density maps using local resolution-guided learning to improve interpretability.

    Imaging
    54Openness
  • Cellpose 3

    2.2K322
    HHMI Janelia Research CampusFebruary 1, 2025cell_biologygeneralist_modelimage_restoration+2

    Generalist cell segmentation framework with a super-generalist cyto3 model and one-click image restoration networks optimized for downstream segmentation quality.

    Imaging
    65Openness
  • WaveOrder

    44
    Chan Zuckerberg InitiativeDecember 13, 2024cnnfluorescence_microscopyimage_restoration+2

    A differentiable wave-optical framework for label-agnostic computational microscopy of biomolecular density and orientation across diverse imaging modalities.

    Imaging
    100Openness
  • BME-X

    6562
    University of North Carolina at Chapel HillDecember 5, 2024cnndenoisingfoundation_model+5

    A tissue-aware foundation model that enhances brain MRI quality across motion correction, super-resolution, denoising and harmonization, boosting downstream segmentation, registration and diagnosis.

    Imaging
    70Openness
  • CELL-Diff

    5
    Chan Zuckerberg InitiativeOctober 18, 2024cell_biologyde_novo_designdiffusion+7

    A unified diffusion model enabling bidirectional transformation between protein amino acid sequences and fluorescence microscopy images for subcellular localization prediction.

    Imaging
    87Openness
  • USFM

    346100
    Fudan UniversityAugust 1, 2024classificationfoundation_modelimage_restoration+4

    A universal ultrasound foundation model pretrained on 2M+ multi-organ images via spatial-frequency masked image modeling, enabling label-efficient segmentation, classification, and enhancement.

    Imaging
    22Openness
  • UniFMIR

    6976
    Fudan UniversityApril 12, 2024denoisingfluorescence_microscopyfoundation_model+3

    Foundation model for fluorescence microscopy image restoration, unifying super-resolution, denoising, isotropic reconstruction, projection, and volumetric reconstruction in one Swin transformer.

    Imaging
    83Openness
  • pytorch_fnet

    162486
    Allen Institute for Cell ScienceSeptember 17, 2018cell_biologycnnimage_restoration+3

    3D convolutional neural network that predicts fluorescent labels of subcellular structures from transmitted-light microscopy images, enabling label-free imaging of living cells.

    Imaging
    26Openness