All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 110 of 10 filtered models

  • Vermeer

    2
    Microsoft Research +2 othersJune 1, 2026autoregressivecell_biologyfluorescence_microscopy+7

    Channel-adaptive autoregressive generative model that synthesizes in-silico fluorescence microscopy of protein subcellular localization from amino-acid sequence and cellular landmark stains.

    ImagingProtein
    17Openness
  • mnDINO

    Morgridge Institute for ResearchMarch 12, 2026cell_biologyfluorescence_microscopyfoundation_model+4

    A DINO-pretrained vision transformer for accurate, robust segmentation of micronuclei in DNA-stained fluorescence microscopy across cell lines and instruments.

    Imaging
    32Openness
  • Universidad Carlos III de MadridJanuary 22, 2026cnncryo_emdenoising+5

    A NAFNet backbone trained with a perceptual GAN objective for high-fidelity bioimage restoration, achieving best LPIPS on 7 of 8 AI4Life benchmarks.

    Imaging
    16Openness
  • MAGNET

    Huazhong University of Science and TechnologyDecember 25, 2025denoisingfluorescence_microscopyfoundation_model+7

    An all-in-one foundation model for microscopic image restoration, unifying 8 tasks across 5 microscopy modalities and 2D/3D data, with zero-shot inference on unseen imaging systems.

    Imaging
    7Openness
  • Micellangelo

    Eindhoven University of TechnologyNovember 24, 2025cell_biologycell_morphology_simulationconditional_generation+5

    Flow-matching generative model that simulates high-resolution fluorescence images of human fibroblasts conditioned on surface micro-topographies, a digital twin of cell-material interactions.

    Imaging
    5Openness
  • WaveOrder

    44
    Chan Zuckerberg InitiativeDecember 13, 2024cnnfluorescence_microscopyimage_restoration+2

    A differentiable wave-optical framework for label-agnostic computational microscopy of biomolecular density and orientation across diverse imaging modalities.

    Imaging
    100Openness
  • SubCell

    610
    Chan Zuckerberg Initiative +2 othersDecember 8, 2024cell_biologyfluorescence_microscopyfoundation_model+4

    Self-supervised Vision Transformer models trained on proteome-wide fluorescence microscopy images from the Human Protein Atlas for subcellular protein localization.

    Imaging
    84Openness
  • UniFMIR

    6976
    Fudan UniversityApril 12, 2024denoisingfluorescence_microscopyfoundation_model+3

    Foundation model for fluorescence microscopy image restoration, unifying super-resolution, denoising, isotropic reconstruction, projection, and volumetric reconstruction in one Swin transformer.

    Imaging
    83Openness
  • Cellpose 2.0

    2.2K1.1K
    HHMI Janelia Research CampusOctober 3, 2022active_learningcell_biologyfluorescence_microscopy+3

    Human-in-the-loop cell segmentation framework enabling custom model training from as few as 100-200 corrected annotations.

    Imaging
    59Openness
  • Cellpose

    2.2K3.4K
    HHMI Janelia Research CampusDecember 7, 2020brightfieldcell_biologyfluorescence_microscopy+2

    Generalist deep learning algorithm for cell and nucleus instance segmentation using simulated diffusion flows, without per-dataset retraining.

    Imaging
    92Openness