Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 1–12 of 12 filtered models
T-cell receptor-MHC restriction prediction from amino acid sequence, mapping TCRs to their restricting HLA allele at 0.97 held-out AUC.
Pan-fungal circRNA prediction from genome sequence and gene annotation alone, ranking candidate backsplice junctions without requiring RNA-seq.
Transformer that predicts protein-RNA binding affinity from Boltz-2 pre-structural embeddings via cross-modal attention, with no 3D structure step.
EEG foundation model whose learned queries map any electrode montage into a fixed latent space, scaling linearly in the number of channels.
Multimodal EHR foundation model that fuses polygenic risk scores into a GPT-2-style backbone by cross-attention for zero-shot disease risk prediction.
Protein-protein interaction predictor fusing evolutionary and structural embeddings to screen bacterial and host-pathogen proteomes in minutes.
Antibody-antigen binding free energy predictor fusing ESM-2 sequence embeddings with persistent homology and interface geometry via cross-attention.
Multimodal single-cell foundation model pretrained on 4M+ co-assayed cells, predicting 382 surface proteins from transcriptomes alone, zero-shot.
Structure-based virtual screening model that scores ligands against apo and predicted pockets, lifting blind-apo EF1% on DUD-E from 11.75 to 37.19.
Latent diffusion model for single-cell multi-omics generation and modality translation, with gradient-based inference of gene regulatory networks.
Single-cell DNA methylation foundation model capturing genome-wide CpG dependencies in whole-genome bisulfite sequencing across tissues and species.