All Competitors
Every biological foundation model, evaluated and ranked by the bio.rodeo team
Showing 145–168 of 203 filtered models
Pulse-PPG
7345—Photoplethysmography foundation model pretrained on raw wearable signals from a field study, transferring across lab and field health tasks.
Biosignals64OpennessCryoLens
19——Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.
Imaging74OpennessNormWear
5931116University of California, San DiegoDecember 12, 2024disease_risk_predictionfoundation_modelmultimodal+5Multimodal foundation model for wearable physiological sensing across PPG, ECG, EEG, GSR, and IMU signals, using channel-aware attention.
Biosignals77OpennessCBraMod
329185—EEG foundation model for brain-computer interface decoding, factorizing self-attention into parallel spatial and temporal branches.
Biosignals78OpennessESM Cambrian
2.9K—1.5KProtein language model family at 300M, 600M, and 6B parameters, purpose-built for representation learning and outperforming ESM-2 at smaller scale.
Protein16OpennessSCimilarity
258125—Single-cell foundation model trained by metric learning to embed scRNA-seq profiles for cell type annotation and similarity search in cell atlases.
Single-cell78OpennessBC-Design
213—Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.
Protein75OpennessSpark3D (S3D)
1573936Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.
Imaging45OpennessPaPaGei
17481—Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.
Biosignals67OpennessDynaCLR
1023—Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.
Imaging71OpennessMasked-autoencoder foundation model pretrained on digital-stethoscope heart sounds and single-lead ECG for cardiovascular disease detection.
Biosignals22OpennessSeqDance / ESMDance
61880Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.
Protein84OpennessD-BETA
3613120Singapore Management University +1 otherOctober 3, 2024autoencodercontrastive_learningecg_classification+6ECG foundation model pretrained on 12-lead waveforms paired with clinical reports, enabling label-efficient and zero-shot cardiac diagnosis.
BiosignalsLanguage model27OpennessECG-JEPA
1617—Joint-embedding predictive foundation model pretrained on over a million unlabeled ECGs, learning transferable 12-lead representations for diagnosis.
Biosignals62OpennessBrain-JEPA
17479—Brain-dynamics foundation model for resting-state fMRI, adapting the Joint-Embedding Predictive Architecture with brain gradient positioning.
BiosignalsImaging18OpennessSiamQuality
181—Foundation model for photoplethysmography (PPG) that learns quality-robust waveform representations for heart rate, blood pressure, and AF detection.
Biosignals36OpennessECG-FM
30096—Open transformer foundation model for 12-lead electrocardiograms, pretrained on 1.5 million unlabeled ECGs with a wav2vec 2.0 self-supervised recipe.
Biosignals67OpennessAnatCL
1820—Brain MRI foundation model family pretrained with anatomically informed contrastive learning for diagnosis and clinical score prediction.
Imaging71OpennessCXR Foundation
19982199Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.
ImagingscVI (CELLxGENE Census)
1.7K2.4K—Variational autoencoder pretrained on 74 million human single-cell transcriptomes from the CELLxGENE Census for batch correction and cell typing.
Single-cell96OpennessCREMA
—7—Self-supervised foundation model for 12-lead ECG, pairing masked autoencoder pretraining with contrastive regularization for robust diagnostics.
Biosignals10Openness