All Competitors

Every biological foundation model, evaluated and ranked by the bio.rodeo team

Showing 145168 of 203 filtered models

  • Pulse-PPG

    7345
    University of Memphis +1 otherFebruary 3, 2025cnncontrastive_learningfoundation_model+5

    Photoplethysmography foundation model pretrained on raw wearable signals from a field study, transferring across lab and field health tasks.

    Biosignals
    64Openness
  • CryoLens

    19
    Chan Zuckerberg InitiativeJanuary 1, 2025cnncryo_etgenerative+6

    Variational autoencoder that learns interpretable representations of protein subtomograms from cryo-ET, trained on 5.8 million synthetic particles.

    Imaging
    74Openness
  • NormWear

    5931116
    University of California, San DiegoDecember 12, 2024disease_risk_predictionfoundation_modelmultimodal+5

    Multimodal foundation model for wearable physiological sensing across PPG, ECG, EEG, GSR, and IMU signals, using channel-aware attention.

    Biosignals
    77Openness
  • CBraMod

    329185
    Zhejiang UniversityDecember 10, 2024brain_computer_interfaceeegeeg_decoding+4

    EEG foundation model for brain-computer interface decoding, factorizing self-attention into parallel spatial and temporal branches.

    Biosignals
    78Openness
  • ESM Cambrian

    2.9K1.5K
    EvolutionaryScaleDecember 1, 2024foundation_modelrepresentation_learningtransformer

    Protein language model family at 300M, 600M, and 6B parameters, purpose-built for representation learning and outperforming ESM-2 at smaller scale.

    Protein
    16Openness
  • AIDO.Cell

    16817108
    genbio.aiNovember 28, 2024bertcell_biologycell_type_annotation+7

    Single-cell RNA-seq foundation model pretrained on 50 million human cells, encoding the full transcriptome for annotation and perturbation modeling.

    Single-cell
    29Openness
  • RelCon

    3430
    Apple +2 othersNovember 27, 2024activity_recognitioncnncontrastive_learning+4

    Motion foundation model for wearable accelerometry, trained with relative contrastive learning on 1B segments from 87,376 participants.

    Biosignals
    48Openness
  • SCimilarity

    258125
    GenentechNovember 20, 2024autoencodercell_type_annotationcontrastive_learning+3

    Single-cell foundation model trained by metric learning to embed scRNA-seq profiles for cell type annotation and similarity search in cell atlases.

    Single-cell
    78Openness
  • BC-Design

    213
    Gerstein Lab +1 otherNovember 3, 2024antibodyantibody_designenzyme+7

    Biochemistry-aware inverse folding model that augments backbone geometry with physicochemical point clouds, reaching ~90% sequence recovery on CATH.

    Protein
    75Openness
  • German Cancer Research Center (DKFZ) +5 othersOctober 30, 2024brain_mricnnfoundation_model+7

    Masked-autoencoder foundation model that pre-trains a 3D Residual Encoder U-Net on roughly 39,000 brain MRIs for volumetric image segmentation.

    Imaging
    45Openness
  • PaPaGei

    17481
    Nokia Bell LabsOctober 27, 2024bias_evaluationcardiovascular_healthcnn+5

    Open foundation model for photoplethysmography (PPG), learning morphology-aware waveform representations for cardiovascular and wearable health tasks.

    Biosignals
    67Openness
  • DynaCLR

    1023
    Chan Zuckerberg InitiativeOctober 15, 2024cell_biologycell_state_classificationcnn+5

    Self-supervised contrastive model embedding cell and organelle dynamics from time-lapse microscopy for cell-state analysis without manual labels.

    Imaging
    71Openness
  • Eko HealthOctober 11, 2024disease_detectionecgfoundation_model+5

    Masked-autoencoder foundation model pretrained on digital-stethoscope heart sounds and single-lead ECG for cardiovascular disease detection.

    Biosignals
    22Openness
  • Columbia UniversityOctober 11, 2024language_modelprotein_dynamicsrepresentation_learning+4

    Protein language models trained on biophysical dynamics from MD simulations and normal-mode analysis; ESMDance builds on ESM2 for variant effects.

    Protein
    84Openness
  • D-BETA

    3613120
    Singapore Management University +1 otherOctober 3, 2024autoencodercontrastive_learningecg_classification+6

    ECG foundation model pretrained on 12-lead waveforms paired with clinical reports, enabling label-efficient and zero-shot cardiac diagnosis.

    BiosignalsLanguage model
    27Openness
  • ECG-JEPA

    1617
    Zuse Institute Berlin +1 otherOctober 2, 2024ecg_classificationelectrocardiogramfoundation_model+4

    Joint-embedding predictive foundation model pretrained on over a million unlabeled ECGs, learning transferable 12-lead representations for diagnosis.

    Biosignals
    62Openness
  • Brain-JEPA

    17479
    National University of SingaporeSeptember 28, 2024brain_dynamicsdisease_diagnosisfmri+5

    Brain-dynamics foundation model for resting-state fMRI, adapting the Joint-Embedding Predictive Architecture with brain gradient positioning.

    BiosignalsImaging
    18Openness
  • gLM2

    92498K
    Tatta Bio +4 othersAugust 17, 2024language_modelmetagenomicsmultimodal+3

    Mixed-modality genomic language model encoding protein coding sequences as amino acids and intergenic DNA as nucleotides in native genomic context.

    DNA & GeneProteinLanguage model
    58Openness
  • Georgia Institute of Technology +1 otherAugust 12, 2024cnncontrastive_learningfoundation_model+3

    Foundation model for photoplethysmography (PPG) that learns quality-robust waveform representations for heart rate, blood pressure, and AF detection.

    Biosignals
    36Openness
  • ECG-FM

    30096
    University of Toronto +1 otherAugust 9, 2024cardiologycontrastive_learningdisease_classification+6

    Open transformer foundation model for 12-lead electrocardiograms, pretrained on 1.5 million unlabeled ECGs with a wav2vec 2.0 self-supervised recipe.

    Biosignals
    67Openness
  • AnatCL

    1820
    University of Turin +1 otherAugust 7, 20243d_cnnbrain_age_predictionbrain_mri+7

    Brain MRI foundation model family pretrained with anatomically informed contrastive learning for diagnosis and clinical score prediction.

    Imaging
    71Openness
  • Google ResearchAugust 2, 2024chest_radiographycnncontrastive_learning+9

    Chest X-ray embedding model built on ELIXR, producing image and image-text embeddings for data-efficient and zero-shot radiograph classification.

    Imaging
  • Chan Zuckerberg InitiativeJuly 1, 2024autoencodercell_type_annotationde_novo_design+6

    Variational autoencoder pretrained on 74 million human single-cell transcriptomes from the CELLxGENE Census for batch correction and cell typing.

    Single-cell
    96Openness
  • CREMA

    7
    Medical AI Co., Ltd.June 26, 2024contrastive_learningecg_diagnosticselectrocardiography+5

    Self-supervised foundation model for 12-lead ECG, pairing masked autoencoder pretraining with contrastive regularization for robust diagnostics.

    Biosignals
    10Openness